Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39651 * 120.15094 * 36.36240 * 3 2 1 5 5 C 1.37928 * 119.84340 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.92346 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47103 * 90.00298 * 6 5 4 8 8 C 1.38382 * 120.15228 * 359.97438 * 5 4 3 9 9 C 1.38336 * 120.30681 * 359.79100 * 8 5 4 10 10 C 1.37973 * 120.15112 * 0.45741 * 9 8 5 11 11 C 1.50699 * 120.07836 * 179.79639 * 10 9 8 12 12 C 1.50706 * 109.46817 * 264.72573 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 H 1.08000 * 120.07893 * 0.02562 * 4 3 2 21 21 H 1.09000 * 109.47495 * 210.00359 * 6 5 4 22 22 H 1.08999 * 109.47277 * 330.00717 * 6 5 4 23 23 H 0.96699 * 114.00496 * 180.02562 * 7 6 5 24 24 H 1.08001 * 119.84732 * 180.02562 * 8 5 4 25 25 H 1.08005 * 119.92768 * 180.23710 * 9 8 5 26 26 H 1.09000 * 109.47247 * 144.72636 * 11 10 9 27 27 H 1.09001 * 109.47358 * 24.72062 * 11 10 9 28 28 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -0.9715 -0.7160 5 6 4.6492 -0.9652 -0.7111 6 6 5.4084 -2.0137 -1.4826 7 8 5.6486 -1.5466 -2.8116 8 6 5.3374 0.0017 0.0005 9 6 4.6485 0.9705 0.7079 10 6 3.2688 0.9730 0.7160 11 6 2.5199 2.0264 1.4910 12 6 2.1621 1.4889 2.8527 13 1 2.4444 0.4834 3.1275 14 6 1.4698 2.2791 3.7455 15 7 1.1213 3.5017 3.4088 16 14 1.0269 1.6131 5.4336 17 1 1.5291 0.2218 5.5643 18 1 1.6478 2.4643 6.4802 19 1 -0.4490 1.6237 5.5983 20 1 2.7340 -1.7264 -1.2721 21 1 6.3601 -2.2101 -0.9890 22 1 4.8225 -2.9321 -1.5207 23 1 6.1339 -2.1721 -3.3668 24 1 6.4174 0.0022 0.0005 25 1 5.1918 1.7245 1.2581 26 1 1.6092 2.2932 0.9548 27 1 3.1479 2.9103 1.6028 28 1 0.6339 4.0575 4.0369 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306756488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -10.002370 kcal Electronic energy + Delta-G solvation = -13441.125451 eV Core-core repulsion = 11035.679902 eV Total energy + Delta-G solvation = -2405.445549 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.34189 -36.83055 -35.57132 -33.62877 -31.79415 -30.83935 -28.31170 -25.23356 -23.54882 -22.57809 -20.66071 -17.66979 -17.42493 -16.41007 -15.64006 -15.40074 -14.54606 -14.06537 -13.88460 -13.42252 -13.19275 -12.54318 -12.37547 -12.13254 -12.00582 -11.51272 -11.38613 -11.16805 -10.93315 -10.56455 -10.52185 -10.12086 -9.70170 -9.55436 -8.51147 -8.48384 -8.06582 -6.10739 -4.15535 1.31395 1.71714 3.27242 3.34985 3.38798 3.42386 3.51565 4.27254 4.39709 4.49550 4.68920 5.05358 5.10237 5.24070 5.30683 5.40542 5.47144 5.76056 5.97098 6.21179 6.37354 6.70959 6.79623 6.85453 7.26082 7.42163 7.54887 7.57796 7.83635 8.17498 8.24680 8.88613 9.49210 10.99415 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.007456 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.449189 B = 3754.428931 C = 4034.328050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.273 3.727 3 C -0.043 4.043 4 C -0.052 4.052 5 C -0.130 4.130 6 C 0.124 3.876 7 O -0.568 6.568 8 C -0.071 4.071 9 C -0.129 4.129 10 C 0.022 3.978 11 C 0.039 3.961 12 C -0.515 4.515 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.283 1.283 20 H 0.123 0.877 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.375 0.625 24 H 0.121 0.879 25 H 0.132 0.868 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 -9.397 -7.985 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.041 4.041 3 C -0.046 4.046 4 C -0.073 4.073 5 C -0.130 4.130 6 C 0.047 3.953 7 O -0.374 6.374 8 C -0.090 4.090 9 C -0.148 4.148 10 C 0.019 3.981 11 C 0.002 3.998 12 C -0.553 4.553 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 H 0.141 0.859 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.222 0.778 24 H 0.139 0.861 25 H 0.150 0.850 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.523 -8.720 -7.686 14.414 hybrid contribution 0.426 -0.730 0.871 1.214 sum 8.949 -9.450 -6.815 14.691 Atomic orbital electron populations 1.81093 1.12234 1.08239 1.09186 1.25420 0.92540 0.93273 0.92913 1.15932 0.84746 0.99732 1.04201 1.20870 0.93366 0.96656 0.96382 1.19218 0.92966 0.99272 1.01551 1.20903 0.97763 0.94189 0.82427 1.86615 1.79591 1.47471 1.23700 1.21154 0.99558 0.93205 0.95065 1.21044 0.93492 0.99726 1.00489 1.20888 0.93805 0.93852 0.89508 1.18525 0.95245 0.91761 0.94220 1.20970 1.36636 1.00067 0.97620 0.92225 1.24990 0.95443 0.94844 0.98793 1.69954 1.38922 1.07969 1.35920 0.86466 0.78295 0.79185 0.83750 1.19556 1.20767 1.20897 0.85887 0.92871 0.93000 0.77840 0.86094 0.85029 0.94956 0.94331 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.00 18.54 41.84 0.78 -9.22 15 2 C 0.27 5.88 13.89 -22.47 -0.31 5.57 15 3 C -0.04 -0.82 5.73 -106.93 -0.61 -1.44 15 4 C -0.05 -0.81 9.41 -39.17 -0.37 -1.18 15 5 C -0.13 -1.82 5.50 -104.68 -0.58 -2.40 15 6 C 0.12 1.29 7.17 36.00 0.26 1.55 15 7 O -0.57 -6.14 13.64 -35.23 -0.48 -6.62 15 8 C -0.07 -1.02 9.69 -39.49 -0.38 -1.40 15 9 C -0.13 -2.22 9.67 -39.64 -0.38 -2.60 15 10 C 0.02 0.45 5.10 -104.21 -0.53 -0.08 15 11 C 0.04 0.98 4.62 -29.03 -0.13 0.85 15 12 C -0.51 -14.17 9.09 -34.44 -0.31 -14.48 15 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 15 N -0.89 -26.30 13.29 55.43 0.74 -25.56 15 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 20 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 21 H 0.05 0.45 8.08 -51.93 -0.42 0.03 15 22 H 0.05 0.46 8.08 -51.93 -0.42 0.04 15 23 H 0.38 2.04 9.12 45.56 0.42 2.45 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.13 2.10 8.06 -52.48 -0.42 1.68 15 26 H 0.03 0.89 7.28 -51.93 -0.38 0.51 15 27 H 0.04 0.99 8.05 -51.93 -0.42 0.57 15 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -32.34 262.49 -5.52 -37.86 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -2.03 Total: -3.14 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.45 Total: -13.96 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 1.51 Total: -34.78 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.48 Total: -6.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.34 -5.52 -37.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306756488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.858 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds