Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39651 * 120.15094 * 36.36240 * 3 2 1 5 5 C 1.37928 * 119.84340 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.92346 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47103 * 90.00298 * 6 5 4 8 8 C 1.38382 * 120.15228 * 359.97438 * 5 4 3 9 9 C 1.38336 * 120.30681 * 359.79100 * 8 5 4 10 10 C 1.37973 * 120.15112 * 0.45741 * 9 8 5 11 11 C 1.50699 * 120.07836 * 179.79639 * 10 9 8 12 12 C 1.50706 * 109.46817 * 264.72573 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 H 1.08000 * 120.07893 * 0.02562 * 4 3 2 21 21 H 1.09000 * 109.47495 * 210.00359 * 6 5 4 22 22 H 1.08999 * 109.47277 * 330.00717 * 6 5 4 23 23 H 0.96699 * 114.00496 * 180.02562 * 7 6 5 24 24 H 1.08001 * 119.84732 * 180.02562 * 8 5 4 25 25 H 1.08005 * 119.92768 * 180.23710 * 9 8 5 26 26 H 1.09000 * 109.47247 * 144.72636 * 11 10 9 27 27 H 1.09001 * 109.47358 * 24.72062 * 11 10 9 28 28 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -0.9715 -0.7160 5 6 4.6492 -0.9652 -0.7111 6 6 5.4084 -2.0137 -1.4826 7 8 5.6486 -1.5466 -2.8116 8 6 5.3374 0.0017 0.0005 9 6 4.6485 0.9705 0.7079 10 6 3.2688 0.9730 0.7160 11 6 2.5199 2.0264 1.4910 12 6 2.1621 1.4889 2.8527 13 1 2.4444 0.4834 3.1275 14 6 1.4698 2.2791 3.7455 15 7 1.1213 3.5017 3.4088 16 14 1.0269 1.6131 5.4336 17 1 1.5291 0.2218 5.5643 18 1 1.6478 2.4643 6.4802 19 1 -0.4490 1.6237 5.5983 20 1 2.7340 -1.7264 -1.2721 21 1 6.3601 -2.2101 -0.9890 22 1 4.8225 -2.9321 -1.5207 23 1 6.1339 -2.1721 -3.3668 24 1 6.4174 0.0022 0.0005 25 1 5.1918 1.7245 1.2581 26 1 1.6092 2.2932 0.9548 27 1 3.1479 2.9103 1.6028 28 1 0.6339 4.0575 4.0369 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306756488.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = -32.439591 kcal Electronic energy + Delta-G solvation = -13442.098402 eV Core-core repulsion = 11035.679902 eV Total energy + Delta-G solvation = -2406.418500 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65689 -37.85500 -37.07959 -35.49375 -33.43559 -32.18540 -29.92618 -26.70875 -24.98078 -24.14108 -22.11551 -19.00955 -18.54225 -18.18324 -16.93829 -16.88239 -16.19680 -15.40777 -15.08274 -14.82656 -14.47525 -14.29787 -14.05719 -13.75032 -13.52976 -13.38875 -12.88155 -12.70801 -12.67112 -12.22924 -12.05496 -11.58504 -11.42740 -10.80932 -10.65831 -9.82115 -9.51686 -8.25708 -6.38070 -0.06428 0.43734 1.34599 1.36579 1.48565 1.75177 2.02205 2.35429 2.95162 3.04592 3.07026 3.70074 3.98818 4.14202 4.19840 4.35111 4.49408 4.66139 4.75216 4.94292 5.04913 5.21063 5.28792 5.41036 5.57736 5.68422 5.81683 5.96752 6.09939 6.57931 6.74451 7.08533 7.30705 8.84377 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.007456 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.449189 B = 3754.428931 C = 4034.328050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.284 3.716 3 C -0.065 4.065 4 C -0.044 4.044 5 C -0.120 4.120 6 C 0.126 3.874 7 O -0.591 6.591 8 C -0.053 4.053 9 C -0.134 4.134 10 C -0.009 4.009 11 C 0.049 3.951 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.286 1.286 20 H 0.148 0.852 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.400 0.600 24 H 0.162 0.838 25 H 0.137 0.863 26 H -0.006 1.006 27 H 0.021 0.979 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -11.736 -8.398 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.030 4.030 3 C -0.068 4.068 4 C -0.065 4.065 5 C -0.121 4.121 6 C 0.049 3.951 7 O -0.400 6.400 8 C -0.072 4.072 9 C -0.152 4.152 10 C -0.012 4.012 11 C 0.012 3.988 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.784 3.216 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.212 1.212 20 H 0.165 0.835 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.250 0.750 24 H 0.180 0.820 25 H 0.155 0.845 26 H 0.012 0.988 27 H 0.039 0.961 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.087 -11.081 -8.118 17.653 hybrid contribution -0.236 -0.050 0.879 0.912 sum 10.851 -11.131 -7.239 17.148 Atomic orbital electron populations 1.81066 1.13508 1.09855 1.10922 1.26010 0.93258 0.92030 0.91706 1.16083 0.83448 1.01266 1.06022 1.21164 0.94351 0.95753 0.95189 1.19793 0.92487 0.99341 1.00442 1.20965 0.98926 0.92992 0.82261 1.86532 1.80352 1.49069 1.24071 1.21569 1.01489 0.91369 0.92766 1.21138 0.91991 1.00955 1.01105 1.20508 0.95178 0.93971 0.91524 1.18211 0.93901 0.92854 0.93844 1.21319 1.36093 0.99912 0.98835 0.92278 1.25900 0.95517 0.95110 1.02845 1.70078 1.40009 1.09323 1.37375 0.85467 0.77669 0.79133 0.79302 1.18461 1.19421 1.21211 0.83460 0.90007 0.91008 0.74984 0.82019 0.84501 0.98814 0.96081 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.95 18.54 19.00 0.35 -22.60 15 2 C 0.28 12.57 13.89 88.33 1.23 13.80 15 3 C -0.06 -2.48 5.73 -21.36 -0.12 -2.61 15 4 C -0.04 -1.27 9.41 22.54 0.21 -1.05 15 5 C -0.12 -2.88 5.50 -19.90 -0.11 -2.99 15 6 C 0.13 1.91 7.17 71.24 0.51 2.42 15 7 O -0.59 -9.86 13.64 -148.98 -2.03 -11.89 15 8 C -0.05 -1.32 9.69 22.33 0.22 -1.10 15 9 C -0.13 -4.39 9.67 22.23 0.21 -4.18 15 10 C -0.01 -0.38 5.10 -19.60 -0.10 -0.48 15 11 C 0.05 2.57 4.62 29.10 0.13 2.71 15 12 C -0.52 -29.67 9.09 25.60 0.23 -29.44 15 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 15 14 C 0.00 0.27 5.46 84.66 0.46 0.74 15 15 N -0.93 -56.84 13.29 21.45 0.28 -56.56 15 16 Si 0.96 45.11 29.54 68.60 2.03 47.14 15 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 15 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 15 20 H 0.15 3.46 8.06 -2.91 -0.02 3.43 15 21 H 0.08 0.84 8.08 -2.39 -0.02 0.82 15 22 H 0.07 0.85 8.08 -2.39 -0.02 0.83 15 23 H 0.40 2.38 9.12 -74.06 -0.68 1.70 15 24 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 25 H 0.14 4.24 8.06 -2.91 -0.02 4.22 15 26 H -0.01 -0.38 7.28 -2.39 -0.02 -0.40 15 27 H 0.02 1.14 8.05 -2.39 -0.02 1.12 15 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 15 Total: -1.00 -73.05 262.49 4.02 -69.03 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: 0.51 Total: -2.93 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 2.88 Total: -22.18 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: 0.64 Total: -79.16 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -2.03 Total: -11.89 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.05 4.02 -69.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306756488.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.592 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds