Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 117.00028 * 2 1 4 4 C 1.38985 * 119.90427 * 359.97438 * 3 2 1 5 5 C 1.37714 * 120.09570 * 180.02562 * 4 3 2 6 6 C 1.39780 * 119.90128 * 0.02562 * 5 4 3 7 7 C 1.43199 * 120.09106 * 179.97438 * 6 5 4 8 8 N 6.69647 * 116.99962 * 359.97150 * 2 1 3 9 9 C 1.39738 * 119.81138 * 359.97438 * 6 5 4 10 10 C 1.50698 * 120.04304 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.47294 * 279.99570 * 10 9 6 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47293 * 89.99746 * 15 13 11 17 17 H 1.48504 * 109.47104 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.47249 * 329.99739 * 15 13 11 19 19 C 1.37747 * 119.90430 * 0.27395 * 9 6 5 20 20 H 1.09007 * 109.46671 * 60.00420 * 1 2 3 21 21 H 1.08994 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47233 * 300.00878 * 1 2 3 23 23 H 1.08004 * 119.95407 * 0.02562 * 4 3 2 24 24 H 1.07993 * 120.05134 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.46665 * 159.99952 * 10 9 6 26 26 H 1.09000 * 109.47722 * 40.00283 * 10 9 6 27 27 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 28 28 H 1.08002 * 119.94980 * 179.72773 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2865 2.3740 -0.0005 5 6 1.9076 3.6031 -0.0011 6 6 3.3033 3.6785 -0.0016 7 6 3.9534 4.9545 -0.0027 8 7 4.4691 5.9666 -0.0030 9 6 4.0624 2.5053 -0.0011 10 6 5.5675 2.5805 -0.0011 11 6 6.0570 2.8513 -1.4005 12 1 5.3489 2.9586 -2.2088 13 6 7.4087 2.9620 -1.6487 14 7 8.2709 2.8308 -0.6643 15 14 8.0153 3.2983 -3.3831 16 1 8.1079 4.7645 -3.5996 17 1 9.3554 2.6852 -3.5664 18 1 7.0650 2.7125 -4.3623 19 6 3.4330 1.2801 -0.0057 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2080 2.3148 -0.0005 24 1 1.3172 4.5074 -0.0019 25 1 5.9785 1.6343 0.3509 26 1 5.8912 3.3852 0.6592 27 1 9.2219 2.9090 -0.8389 28 1 4.0190 0.3729 -0.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306819482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = 4.932435 kcal Electronic energy + Delta-G solvation = -13563.515791 eV Core-core repulsion = 11158.717864 eV Total energy + Delta-G solvation = -2404.797928 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94247 -37.74175 -35.35026 -33.44874 -31.42313 -30.36162 -27.73806 -26.88180 -23.45911 -22.94680 -20.75611 -18.14106 -17.43485 -16.38378 -16.09680 -15.63508 -14.61730 -14.02766 -13.90547 -13.32409 -13.22017 -12.84525 -12.31517 -12.09232 -11.98486 -11.74469 -11.59260 -11.28633 -10.92761 -10.64957 -10.63094 -10.47881 -9.71886 -9.54787 -8.46336 -8.29953 -7.82948 -6.08593 -4.12931 1.35922 1.77064 3.31065 3.36959 3.37523 3.40514 3.51093 3.57432 4.37917 4.51429 4.68016 4.95185 5.12586 5.13768 5.20005 5.27866 5.42286 5.56829 5.88979 6.03885 6.34506 6.46711 6.56275 6.82571 7.06440 7.41212 7.56142 7.60982 7.85911 8.19339 8.33092 8.90548 9.51673 11.01713 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.008407 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.236903 B = 3329.660269 C = 3828.065795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.150 3.850 4 C -0.237 4.237 5 C -0.035 4.035 6 C -0.074 4.074 7 C 0.277 3.723 8 N -0.437 5.437 9 C 0.050 3.950 10 C 0.041 3.959 11 C -0.514 4.514 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.158 4.158 20 H 0.055 0.945 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -4.774 1.724 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.104 3.896 4 C -0.256 4.256 5 C -0.055 4.055 6 C -0.078 4.078 7 C -0.038 4.038 8 N -0.113 5.113 9 C 0.048 3.952 10 C 0.004 3.996 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.177 4.177 20 H 0.073 0.927 21 H 0.114 0.886 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.144 0.856 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.205 -3.406 1.765 14.714 hybrid contribution -0.022 -0.103 -0.982 0.987 sum -14.228 -3.509 0.783 14.675 Atomic orbital electron populations 1.23028 0.78850 1.03582 1.01322 1.86056 1.21045 1.27390 1.88400 1.19291 0.92391 0.83774 0.94171 1.20878 0.99571 0.91847 1.13260 1.20792 0.92327 0.97361 0.95040 1.15919 0.91943 0.87052 1.12879 1.25348 0.92881 0.92384 0.93162 1.81085 1.07593 1.12901 1.09719 1.20617 0.99027 0.89562 0.86014 1.18521 0.83254 0.99264 0.98527 1.20917 0.91784 1.49926 0.92615 0.92275 1.24965 0.96779 0.94908 0.97299 1.69947 1.02184 1.49343 1.31343 0.86528 0.78203 0.78576 0.84443 1.20557 1.21016 1.19623 1.20305 0.90465 0.98714 1.08225 0.92672 0.88575 0.92712 0.85412 0.85569 0.94257 0.94648 0.92702 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 15 2 O -0.32 -4.31 10.49 -18.99 -0.20 -4.51 15 3 C 0.15 2.29 6.69 -39.04 -0.26 2.03 15 4 C -0.24 -3.18 9.01 -39.50 -0.36 -3.53 15 5 C -0.03 -0.51 9.75 -39.20 -0.38 -0.89 15 6 C -0.07 -1.41 5.73 -106.84 -0.61 -2.02 15 7 C 0.28 5.90 13.79 -22.47 -0.31 5.59 15 8 N -0.44 -10.08 18.54 41.84 0.78 -9.31 15 9 C 0.05 1.04 5.10 -104.24 -0.53 0.50 15 10 C 0.04 1.03 4.60 -29.03 -0.13 0.89 15 11 C -0.51 -14.22 8.86 -34.44 -0.31 -14.53 15 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 13 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 14 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 15 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 15 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 19 C -0.16 -2.86 9.59 -39.50 -0.38 -3.23 15 20 H 0.05 0.43 7.65 -51.93 -0.40 0.03 15 21 H 0.10 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.05 0.41 7.65 -51.93 -0.40 0.01 15 23 H 0.13 1.28 6.28 -52.48 -0.33 0.95 15 24 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 25 H 0.04 1.01 8.00 -51.93 -0.42 0.59 15 26 H 0.04 0.96 7.48 -51.93 -0.39 0.58 15 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 28 H 0.14 2.42 8.03 -52.49 -0.42 1.99 15 LS Contribution 258.91 15.07 3.90 3.90 Total: -1.00 -31.29 258.91 -4.92 -36.21 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -2.74 Total: -5.29 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.38 Total: -12.27 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 1.51 Total: -34.92 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.29 -4.92 -36.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.141 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds