Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 117.00028 * 2 1 4 4 C 1.38985 * 119.90427 * 359.97438 * 3 2 1 5 5 C 1.37714 * 120.09570 * 180.02562 * 4 3 2 6 6 C 1.39780 * 119.90128 * 0.02562 * 5 4 3 7 7 C 1.43199 * 120.09106 * 179.97438 * 6 5 4 8 8 N 6.69647 * 116.99962 * 359.97150 * 2 1 3 9 9 C 1.39738 * 119.81138 * 359.97438 * 6 5 4 10 10 C 1.50698 * 120.04304 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.47294 * 279.99570 * 10 9 6 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47293 * 89.99746 * 15 13 11 17 17 H 1.48504 * 109.47104 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.47249 * 329.99739 * 15 13 11 19 19 C 1.37747 * 119.90430 * 0.27395 * 9 6 5 20 20 H 1.09007 * 109.46671 * 60.00420 * 1 2 3 21 21 H 1.08994 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47233 * 300.00878 * 1 2 3 23 23 H 1.08004 * 119.95407 * 0.02562 * 4 3 2 24 24 H 1.07993 * 120.05134 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.46665 * 159.99952 * 10 9 6 26 26 H 1.09000 * 109.47722 * 40.00283 * 10 9 6 27 27 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 28 28 H 1.08002 * 119.94980 * 179.72773 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2865 2.3740 -0.0005 5 6 1.9076 3.6031 -0.0011 6 6 3.3033 3.6785 -0.0016 7 6 3.9534 4.9545 -0.0027 8 7 4.4691 5.9666 -0.0030 9 6 4.0624 2.5053 -0.0011 10 6 5.5675 2.5805 -0.0011 11 6 6.0570 2.8513 -1.4005 12 1 5.3489 2.9586 -2.2088 13 6 7.4087 2.9620 -1.6487 14 7 8.2709 2.8308 -0.6643 15 14 8.0153 3.2983 -3.3831 16 1 8.1079 4.7645 -3.5996 17 1 9.3554 2.6852 -3.5664 18 1 7.0650 2.7125 -4.3623 19 6 3.4330 1.2801 -0.0057 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2080 2.3148 -0.0005 24 1 1.3172 4.5074 -0.0019 25 1 5.9785 1.6343 0.3509 26 1 5.8912 3.3852 0.6592 27 1 9.2219 2.9090 -0.8389 28 1 4.0190 0.3729 -0.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306819482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -14.627689 kcal Electronic energy + Delta-G solvation = -13564.363982 eV Core-core repulsion = 11158.717864 eV Total energy + Delta-G solvation = -2405.646118 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14686 -39.02376 -36.97362 -35.40089 -33.09273 -31.66141 -29.25918 -28.02279 -25.32729 -24.23893 -22.23394 -19.52782 -18.69717 -18.42370 -17.30809 -16.58492 -16.55032 -15.37504 -15.18456 -14.94889 -14.55654 -14.39885 -14.15627 -13.57631 -13.38917 -13.26804 -13.04857 -12.94224 -12.58644 -12.52385 -12.01028 -11.87829 -11.49344 -11.42173 -10.64803 -9.73284 -9.11729 -8.25079 -6.36601 -0.00289 0.47490 1.35222 1.37155 1.47384 1.86402 2.08495 2.35393 2.40552 3.01827 3.08289 3.20709 3.89607 3.99382 4.25507 4.45882 4.56045 4.58845 4.66643 4.86666 5.01123 5.16266 5.24974 5.31153 5.31563 5.64314 5.71409 5.84392 6.08405 6.49314 6.69727 6.75427 7.31711 8.85203 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.008407 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.236903 B = 3329.660269 C = 3828.065795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.165 3.835 4 C -0.214 4.214 5 C -0.014 4.014 6 C -0.100 4.100 7 C 0.289 3.711 8 N -0.484 5.484 9 C 0.027 3.973 10 C 0.050 3.950 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.282 1.282 17 H -0.276 1.276 18 H -0.258 1.258 19 C -0.174 4.174 20 H 0.071 0.929 21 H 0.118 0.882 22 H 0.074 0.926 23 H 0.178 0.822 24 H 0.164 0.836 25 H 0.019 0.981 26 H 0.001 0.999 27 H 0.265 0.735 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 -5.460 0.824 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.233 4.233 5 C -0.034 4.034 6 C -0.104 4.104 7 C -0.024 4.024 8 N -0.161 5.161 9 C 0.024 3.976 10 C 0.013 3.987 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.782 3.218 16 H -0.208 1.208 17 H -0.201 1.201 18 H -0.182 1.182 19 C -0.193 4.193 20 H 0.090 0.910 21 H 0.136 0.864 22 H 0.093 0.907 23 H 0.195 0.805 24 H 0.181 0.819 25 H 0.037 0.963 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.614 -4.111 0.863 18.108 hybrid contribution 0.837 -0.035 -0.645 1.057 sum -16.778 -4.146 0.218 17.284 Atomic orbital electron populations 1.23481 0.75753 1.05867 1.03017 1.86060 1.24136 1.26451 1.87647 1.19241 0.91403 0.85367 0.92190 1.21359 1.01751 0.90101 1.10052 1.21164 0.90260 0.99585 0.92383 1.16064 0.93819 0.85031 1.15463 1.25896 0.92050 0.92613 0.91850 1.81067 1.08725 1.14519 1.11827 1.20114 0.96367 0.91539 0.89570 1.18200 0.87185 0.96679 0.96632 1.21259 0.91995 1.49054 0.93818 0.92433 1.25856 0.97171 0.94866 1.01286 1.70068 1.02460 1.50689 1.33463 0.85552 0.78190 0.78119 0.79944 1.20826 1.20060 1.18200 1.20170 0.92365 0.97310 1.09454 0.91006 0.86372 0.90747 0.80529 0.81875 0.96267 0.98110 0.92609 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 15 2 O -0.33 -7.79 10.49 -90.88 -0.95 -8.74 15 3 C 0.17 4.54 6.69 22.62 0.15 4.69 15 4 C -0.21 -4.65 9.01 22.32 0.20 -4.45 15 5 C -0.01 -0.35 9.75 22.52 0.22 -0.13 15 6 C -0.10 -3.71 5.73 -21.30 -0.12 -3.84 15 7 C 0.29 12.51 13.79 88.33 1.22 13.73 15 8 N -0.48 -22.98 18.54 19.00 0.35 -22.63 15 9 C 0.03 1.12 5.10 -19.62 -0.10 1.02 15 10 C 0.05 2.65 4.60 29.10 0.13 2.78 15 11 C -0.52 -29.95 8.86 25.60 0.23 -29.73 15 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 13 C 0.01 0.40 5.46 84.65 0.46 0.86 15 14 N -0.93 -57.01 13.29 21.45 0.28 -56.72 15 15 Si 0.96 45.66 29.54 68.60 2.03 47.68 15 16 H -0.28 -13.50 7.11 99.48 0.71 -12.79 15 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 19 C -0.17 -6.24 9.59 22.32 0.21 -6.02 15 20 H 0.07 0.68 7.65 -2.38 -0.02 0.66 15 21 H 0.12 0.95 8.14 -2.39 -0.02 0.93 15 22 H 0.07 0.65 7.65 -2.39 -0.02 0.64 15 23 H 0.18 2.19 6.28 -2.91 -0.02 2.17 15 24 H 0.16 3.03 8.06 -2.91 -0.02 3.00 15 25 H 0.02 1.05 8.00 -2.39 -0.02 1.03 15 26 H 0.00 0.04 7.48 -2.39 -0.02 0.02 15 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 28 H 0.13 4.66 8.03 -2.91 -0.02 4.64 15 Total: -1.00 -71.58 258.91 6.60 -64.98 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: 1.17 Total: -4.76 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.72 Total: -19.82 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: 0.64 Total: -79.35 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.95 Total: -8.74 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.58 6.60 -64.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.352 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds