Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 109.46706 * 2 1 4 4 N 1.65603 * 102.99812 * 109.05300 * 2 1 3 5 5 C 1.46921 * 120.63221 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77565 * 233.58849 * 5 4 2 7 7 C 1.53046 * 109.31128 * 305.36180 * 6 5 4 8 8 C 1.53046 * 109.53579 * 61.36447 * 7 6 5 9 9 H 1.09001 * 109.49519 * 58.58791 * 8 7 6 10 10 C 1.50695 * 109.49627 * 178.68180 * 8 7 6 11 11 H 1.08005 * 120.00279 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00043 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99770 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00037 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47335 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47123 * 120.00637 * 14 12 10 17 17 H 1.48506 * 109.47391 * 240.00214 * 14 12 10 18 18 C 1.46928 * 120.62842 * 179.97438 * 4 2 1 19 19 H 1.08997 * 109.47421 * 310.94494 * 1 2 3 20 20 H 1.09000 * 109.46931 * 70.94864 * 1 2 3 21 21 H 1.08997 * 109.47175 * 190.94516 * 1 2 3 22 22 H 1.08996 * 109.58905 * 113.79904 * 5 4 2 23 23 H 1.09001 * 109.70481 * 353.44257 * 5 4 2 24 24 H 1.09002 * 109.49998 * 185.41388 * 6 5 4 25 25 H 1.08995 * 109.52901 * 65.32798 * 6 5 4 26 26 H 1.08993 * 109.45866 * 181.38621 * 7 6 5 27 27 H 1.09000 * 109.45949 * 301.34958 * 7 6 5 28 28 H 0.97004 * 119.99697 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.58351 * 246.20458 * 18 4 2 30 30 H 1.09002 * 109.58642 * 6.48114 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 7 2.1865 -0.5267 1.5252 5 6 1.1231 -0.8582 2.4832 6 6 1.3598 -0.0694 3.7750 7 6 2.7753 -0.3479 4.2860 8 6 3.7959 0.1147 3.2436 9 1 3.6611 1.1788 3.0497 10 6 5.1898 -0.1303 3.7613 11 1 5.3339 -0.5722 4.7362 12 6 6.2812 0.2087 2.9899 13 7 6.1057 0.7464 1.8026 14 14 8.0089 -0.0956 3.6313 15 1 7.9349 -0.7060 4.9830 16 1 8.7235 -1.0165 2.7112 17 1 8.7422 1.1935 3.7093 18 6 3.5868 -0.6726 1.9456 19 1 -0.3634 0.6734 0.7762 20 1 -0.3633 0.3354 -0.9714 21 1 -0.3633 -1.0089 0.1951 22 1 1.1449 -1.9265 2.6983 23 1 0.1536 -0.5897 2.0636 24 1 0.6341 -0.3777 4.5277 25 1 1.2478 0.9965 3.5767 26 1 2.9377 0.1928 5.2182 27 1 2.8943 -1.4172 4.4611 28 1 6.8735 0.9853 1.2600 29 1 3.8091 -1.7258 2.1168 30 1 4.2441 -0.2820 1.1688 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306860982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -40.689517 kcal Electronic energy + Delta-G solvation = -13486.379154 eV Core-core repulsion = 11215.046862 eV Total energy + Delta-G solvation = -2271.332293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.39763 -34.84281 -33.09749 -31.11642 -30.04793 -28.30507 -24.88923 -23.07856 -21.55838 -19.07142 -17.10854 -16.24945 -15.73659 -14.67652 -14.52732 -13.96006 -13.53820 -13.19025 -12.83933 -12.50191 -12.42472 -12.26017 -11.79662 -11.64281 -10.96553 -10.76535 -10.41502 -10.24156 -10.19540 -10.04334 -9.65069 -9.02012 -8.78432 -8.45673 -8.18299 -7.09715 -5.95025 -4.02107 2.50068 3.07732 3.31936 3.39974 3.43701 4.46206 4.64088 5.30156 5.35955 5.46181 5.56296 5.69606 5.79320 6.08869 6.16653 6.26828 6.44855 6.65323 6.77585 6.88730 7.03293 7.10449 7.47022 7.66148 7.74212 7.96911 8.14253 8.50630 9.02800 9.62185 11.10835 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.010312 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.745867 B = 2714.659750 C = 3217.518731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.533 4.533 2 S 1.485 4.515 3 O -0.892 6.892 4 N -0.892 5.892 5 C 0.119 3.881 6 C -0.136 4.136 7 C -0.103 4.103 8 C 0.035 3.965 9 H 0.027 0.973 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.145 3.855 19 H 0.076 0.924 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.261 0.739 29 H 0.040 0.960 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 -6.939 -3.900 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.687 4.687 2 S 1.586 4.414 3 O -0.875 6.875 4 N -0.730 5.730 5 C -0.009 4.009 6 C -0.176 4.176 7 C -0.141 4.141 8 C 0.015 3.985 9 H 0.045 0.955 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.525 5.525 14 Si 0.719 3.281 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.020 3.980 19 H 0.095 0.905 20 H 0.114 0.886 21 H 0.122 0.878 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.824 -6.540 -4.753 11.968 hybrid contribution -0.054 1.299 1.896 2.299 sum -8.878 -5.241 -2.857 10.698 Atomic orbital electron populations 1.28309 1.27612 1.06591 1.06179 1.70216 0.82537 0.97072 0.91539 1.93050 1.71914 1.40841 1.81700 1.55422 1.10907 1.80592 1.26055 1.21452 0.90161 0.98475 0.90797 1.21966 0.98652 1.00030 0.96927 1.21513 0.93494 0.99868 0.99225 1.19000 0.92603 0.96120 0.90818 0.95474 1.21217 0.90468 1.41098 1.02586 0.92536 1.25045 0.99146 0.94927 0.95046 1.69918 1.30253 1.42093 1.10227 0.86549 0.84738 0.77834 0.78935 1.19857 1.20964 1.21130 1.21665 0.77432 0.98197 1.00701 0.90506 0.88585 0.87846 0.92750 0.91909 0.93248 0.92994 0.93758 0.93386 0.92897 0.94142 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -6.80 9.00 101.05 0.91 -5.89 16 2 S 1.48 24.42 14.44 -107.50 -1.55 22.87 16 3 O -0.89 -21.91 18.01 -35.23 -0.63 -22.55 16 4 N -0.89 -17.24 3.25 -113.50 -0.37 -17.61 16 5 C 0.12 1.98 6.33 -3.71 -0.02 1.96 16 6 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 7 C -0.10 -2.25 5.11 -26.68 -0.14 -2.39 16 8 C 0.03 0.91 2.25 -91.63 -0.21 0.70 16 9 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.51 -14.42 8.56 -34.44 -0.29 -14.72 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -26.17 11.40 55.43 0.63 -25.53 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.14 3.42 5.51 -3.69 -0.02 3.40 16 19 H 0.08 1.13 7.38 -51.93 -0.38 0.75 16 20 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 21 H 0.10 1.03 7.67 -51.93 -0.40 0.63 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.89 4.82 -51.93 -0.25 0.64 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.61 6.04 -51.93 -0.31 2.30 16 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -35.57 253.21 -7.42 -42.99 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.27 Total: -2.42 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -0.03 Total: -18.05 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.26 Total: -43.14 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.63 Total: -22.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 24.42 SS G_CDS: -1.55 Total: 22.87 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -35.57 -7.42 -42.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306860982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.303 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds