Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 109.46706 * 2 1 4 4 N 1.65603 * 102.99812 * 109.05300 * 2 1 3 5 5 C 1.46921 * 120.63221 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77565 * 233.58849 * 5 4 2 7 7 C 1.53046 * 109.31128 * 305.36180 * 6 5 4 8 8 C 1.53046 * 109.53579 * 61.36447 * 7 6 5 9 9 H 1.09001 * 109.49519 * 58.58791 * 8 7 6 10 10 C 1.50695 * 109.49627 * 178.68180 * 8 7 6 11 11 H 1.08005 * 120.00279 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00043 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99770 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00037 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47335 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47123 * 120.00637 * 14 12 10 17 17 H 1.48506 * 109.47391 * 240.00214 * 14 12 10 18 18 C 1.46928 * 120.62842 * 179.97438 * 4 2 1 19 19 H 1.08997 * 109.47421 * 310.94494 * 1 2 3 20 20 H 1.09000 * 109.46931 * 70.94864 * 1 2 3 21 21 H 1.08997 * 109.47175 * 190.94516 * 1 2 3 22 22 H 1.08996 * 109.58905 * 113.79904 * 5 4 2 23 23 H 1.09001 * 109.70481 * 353.44257 * 5 4 2 24 24 H 1.09002 * 109.49998 * 185.41388 * 6 5 4 25 25 H 1.08995 * 109.52901 * 65.32798 * 6 5 4 26 26 H 1.08993 * 109.45866 * 181.38621 * 7 6 5 27 27 H 1.09000 * 109.45949 * 301.34958 * 7 6 5 28 28 H 0.97004 * 119.99697 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.58351 * 246.20458 * 18 4 2 30 30 H 1.09002 * 109.58642 * 6.48114 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 7 2.1865 -0.5267 1.5252 5 6 1.1231 -0.8582 2.4832 6 6 1.3598 -0.0694 3.7750 7 6 2.7753 -0.3479 4.2860 8 6 3.7959 0.1147 3.2436 9 1 3.6611 1.1788 3.0497 10 6 5.1898 -0.1303 3.7613 11 1 5.3339 -0.5722 4.7362 12 6 6.2812 0.2087 2.9899 13 7 6.1057 0.7464 1.8026 14 14 8.0089 -0.0956 3.6313 15 1 7.9349 -0.7060 4.9830 16 1 8.7235 -1.0165 2.7112 17 1 8.7422 1.1935 3.7093 18 6 3.5868 -0.6726 1.9456 19 1 -0.3634 0.6734 0.7762 20 1 -0.3633 0.3354 -0.9714 21 1 -0.3633 -1.0089 0.1951 22 1 1.1449 -1.9265 2.6983 23 1 0.1536 -0.5897 2.0636 24 1 0.6341 -0.3777 4.5277 25 1 1.2478 0.9965 3.5767 26 1 2.9377 0.1928 5.2182 27 1 2.8943 -1.4172 4.4611 28 1 6.8735 0.9853 1.2600 29 1 3.8091 -1.7258 2.1168 30 1 4.2441 -0.2820 1.1688 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306860982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -67.621135 kcal Electronic energy + Delta-G solvation = -13487.546997 eV Core-core repulsion = 11215.046862 eV Total energy + Delta-G solvation = -2272.500135 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.09346 -36.50880 -35.09478 -32.83174 -31.76047 -29.60110 -26.87365 -24.76123 -23.28616 -20.84014 -18.77129 -18.17701 -17.28905 -16.52876 -16.16281 -15.43903 -15.17621 -14.75533 -14.53348 -14.30914 -13.91674 -13.58569 -13.47746 -13.07798 -12.89105 -12.55625 -12.24880 -12.18608 -11.77904 -11.73777 -11.49303 -10.91555 -10.68971 -10.54219 -9.77414 -8.63441 -8.09872 -6.26877 1.14949 1.40424 1.41607 1.54089 1.75523 2.42478 3.16122 3.29843 3.96786 4.17151 4.30630 4.34620 4.53681 4.65241 4.71632 4.81013 4.94933 5.07482 5.14319 5.22257 5.25770 5.31679 5.52765 5.70739 5.89866 5.98826 6.14136 6.42066 6.87041 7.42247 8.94701 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.010312 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.745867 B = 2714.659750 C = 3217.518731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.514 4.514 2 S 1.517 4.483 3 O -0.980 6.980 4 N -0.898 5.898 5 C 0.111 3.889 6 C -0.135 4.135 7 C -0.099 4.099 8 C 0.028 3.972 9 H -0.037 1.037 10 C -0.535 4.535 11 H 0.058 0.942 12 C 0.009 3.991 13 N -0.920 5.920 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.288 1.288 18 C 0.159 3.841 19 H 0.062 0.938 20 H 0.121 0.879 21 H 0.147 0.853 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.021 0.979 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -9.194 -3.604 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.672 4.672 2 S 1.623 4.377 3 O -0.965 6.965 4 N -0.733 5.733 5 C -0.015 4.015 6 C -0.174 4.174 7 C -0.136 4.136 8 C 0.008 3.992 9 H -0.019 1.019 10 C -0.574 4.574 11 H 0.076 0.924 12 C -0.190 4.190 13 N -0.559 5.559 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.214 1.214 18 C 0.032 3.968 19 H 0.081 0.919 20 H 0.140 0.860 21 H 0.165 0.835 22 H 0.105 0.895 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.434 -8.810 -4.435 14.358 hybrid contribution 0.294 2.003 1.802 2.710 sum -10.140 -6.808 -2.633 12.494 Atomic orbital electron populations 1.28072 1.22604 1.09148 1.07387 1.69264 0.84765 0.94068 0.89626 1.92941 1.76088 1.44629 1.82828 1.55305 1.09953 1.80608 1.27482 1.21802 0.90489 0.99998 0.89245 1.21973 0.97382 0.98734 0.99341 1.21415 0.94422 1.00399 0.97408 1.18993 0.93623 0.92795 0.93746 1.01907 1.21581 0.91858 1.41240 1.02722 0.92416 1.25905 1.03456 0.94527 0.95113 1.70108 1.31346 1.42954 1.11511 0.85454 0.79387 0.77631 0.78842 1.18787 1.19700 1.21422 1.21143 0.79574 0.97798 0.98258 0.91866 0.86039 0.83483 0.89538 0.88544 0.89202 0.96017 0.94778 0.91692 0.92983 0.92960 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -11.02 9.00 113.37 1.02 -10.00 16 2 S 1.52 48.97 14.44 -56.49 -0.82 48.15 16 3 O -0.98 -50.20 18.01 -148.98 -2.68 -52.88 16 4 N -0.90 -33.91 3.25 -513.00 -1.67 -35.58 16 5 C 0.11 3.32 6.33 86.36 0.55 3.87 16 6 C -0.14 -4.80 6.08 30.67 0.19 -4.61 16 7 C -0.10 -4.27 5.11 30.63 0.16 -4.12 16 8 C 0.03 1.54 2.25 -11.45 -0.03 1.52 16 9 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 10 C -0.54 -30.77 8.56 25.60 0.22 -30.55 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 12 C 0.01 0.50 5.30 84.65 0.45 0.95 16 13 N -0.92 -56.56 11.40 21.45 0.24 -56.31 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 C 0.16 7.64 5.51 86.38 0.48 8.12 16 19 H 0.06 1.63 7.38 -2.39 -0.02 1.61 16 20 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.15 1.98 7.67 -2.39 -0.02 1.96 16 22 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.10 2.26 4.82 -2.39 -0.01 2.25 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 3.58 6.04 -2.39 -0.01 3.56 16 Total: -1.00 -82.61 253.21 1.24 -81.36 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.11 Total: 3.29 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 3.03 Total: -34.83 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -1.42 Total: -91.89 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.68 Total: -52.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 48.97 SS G_CDS: -0.82 Total: 48.15 kcal Total: -82.61 1.24 -81.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306860982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -82.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds