Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42096 * 109.46946 * 2 1 4 4 N 1.65606 * 102.99919 * 250.94460 * 2 1 3 5 5 C 1.46921 * 120.63136 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77565 * 233.63306 * 5 4 2 7 7 C 1.53046 * 109.31128 * 305.36180 * 6 5 4 8 8 C 1.53046 * 109.53579 * 61.36447 * 7 6 5 9 9 H 1.09001 * 109.49519 * 58.58791 * 8 7 6 10 10 C 1.50695 * 109.49627 * 178.68180 * 8 7 6 11 11 H 1.08005 * 120.00279 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00043 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99770 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00037 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47335 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47123 * 120.00637 * 14 12 10 17 17 H 1.48506 * 109.47391 * 240.00214 * 14 12 10 18 18 C 1.46928 * 120.62928 * 180.02562 * 4 2 1 19 19 H 1.09001 * 109.47316 * 169.05544 * 1 2 3 20 20 H 1.08999 * 109.47391 * 289.05521 * 1 2 3 21 21 H 1.09006 * 109.47262 * 49.05681 * 1 2 3 22 22 H 1.08996 * 109.58905 * 113.84360 * 5 4 2 23 23 H 1.09001 * 109.70481 * 353.48713 * 5 4 2 24 24 H 1.09002 * 109.49998 * 185.41388 * 6 5 4 25 25 H 1.08995 * 109.52901 * 65.32798 * 6 5 4 26 26 H 1.08993 * 109.45866 * 181.38621 * 7 6 5 27 27 H 1.09000 * 109.45949 * 301.34958 * 7 6 5 28 28 H 0.97004 * 119.99697 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.58351 * 246.16001 * 18 4 2 30 30 H 1.09002 * 109.58642 * 6.43657 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 7 2.1865 -0.5268 -1.5252 5 6 1.1231 -0.8573 -2.4836 6 6 1.3591 -2.2755 -3.0124 7 6 2.7747 -2.3728 -3.5860 8 6 3.7953 -2.0934 -2.4803 9 1 3.6599 -2.8105 -1.6706 10 6 5.1892 -2.2211 -3.0385 11 1 5.3334 -2.4757 -4.0781 12 6 6.2805 -2.0119 -2.2222 13 7 6.1049 -1.7014 -0.9564 14 14 8.0083 -2.1696 -2.9143 15 1 7.9343 -2.5243 -4.3544 16 1 8.7235 -0.8774 -2.7593 17 1 8.7410 -3.2320 -2.1795 18 6 3.5868 -0.6726 -1.9456 19 1 -0.3634 -1.0090 -0.1951 20 1 -0.3634 0.3355 0.9713 21 1 -0.3634 0.6735 -0.7763 22 1 1.1454 -0.1498 -3.3125 23 1 0.1535 -0.8088 -1.9879 24 1 0.6335 -2.4976 -3.7948 25 1 1.2466 -2.9914 -2.1981 26 1 2.9367 -3.3739 -3.9852 27 1 2.8942 -1.6400 -4.3840 28 1 6.8728 -1.5546 -0.3820 29 1 3.8097 0.0499 -2.7307 30 1 4.2440 -0.5004 -1.0933 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306860983.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -43.049649 kcal Electronic energy + Delta-G solvation = -13411.772117 eV Core-core repulsion = 11140.337481 eV Total energy + Delta-G solvation = -2271.434636 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.44284 -34.95925 -33.15628 -31.15128 -30.08832 -28.33630 -24.93562 -23.12285 -21.59006 -19.06395 -17.25834 -16.26125 -15.81466 -14.72180 -14.52818 -13.94815 -13.57809 -13.27054 -12.96708 -12.55843 -12.49074 -12.34021 -11.87772 -11.43061 -10.99126 -10.79840 -10.45306 -10.34142 -10.25086 -10.13276 -9.74733 -9.10102 -8.92987 -8.44814 -8.13006 -7.14233 -6.04716 -4.08176 2.44810 3.05968 3.29960 3.38357 3.41712 4.42497 4.55095 5.25368 5.30827 5.46903 5.51736 5.67374 5.77390 6.06737 6.13624 6.24519 6.42182 6.62251 6.72205 6.84783 7.02232 7.11121 7.40846 7.62695 7.69097 7.89326 8.04298 8.44868 8.95708 9.56595 11.03040 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.010152 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.259643 B = 2757.358254 C = 3305.217263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.532 4.532 2 S 1.496 4.504 3 O -0.912 6.912 4 N -0.892 5.892 5 C 0.118 3.882 6 C -0.128 4.128 7 C -0.106 4.106 8 C 0.041 3.959 9 H 0.034 0.966 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.147 3.853 19 H 0.106 0.894 20 H 0.097 0.903 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.026 0.974 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 -2.347 2.151 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.687 4.687 2 S 1.599 4.401 3 O -0.895 6.895 4 N -0.730 5.730 5 C -0.010 4.010 6 C -0.167 4.167 7 C -0.144 4.144 8 C 0.020 3.980 9 H 0.052 0.948 10 C -0.552 4.552 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.022 3.978 19 H 0.125 0.875 20 H 0.116 0.884 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.905 -1.936 3.002 9.595 hybrid contribution -0.018 1.313 -1.932 2.336 sum -8.923 -0.623 1.070 9.009 Atomic orbital electron populations 1.28306 1.27401 1.06741 1.06227 1.70602 0.82229 0.95708 0.91556 1.92931 1.72748 1.41650 1.82217 1.55320 1.11010 1.80284 1.26371 1.21449 0.90194 0.96199 0.93157 1.21890 0.98462 0.96533 0.99820 1.21542 0.93615 0.99955 0.99315 1.18998 0.92611 0.92883 0.93475 0.94757 1.21239 0.90469 1.47111 0.96386 0.92478 1.24992 0.99224 0.94922 0.94856 1.69824 1.30527 1.47964 1.04855 0.86527 0.84568 0.77671 0.79179 1.19859 1.21066 1.20955 1.21689 0.77252 0.98342 1.00525 0.87549 0.88430 0.90672 0.94331 0.91605 0.93192 0.91943 0.93366 0.93744 0.92779 0.95508 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -6.84 9.00 101.05 0.91 -5.93 16 2 S 1.50 25.16 14.44 -107.50 -1.55 23.61 16 3 O -0.91 -21.51 18.01 -35.23 -0.63 -22.14 16 4 N -0.89 -17.49 3.25 -113.51 -0.37 -17.85 16 5 C 0.12 1.98 6.33 -3.71 -0.02 1.96 16 6 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 7 C -0.11 -2.15 5.11 -26.68 -0.14 -2.28 16 8 C 0.04 0.97 2.25 -91.63 -0.21 0.76 16 9 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 10 C -0.51 -13.69 8.56 -34.44 -0.29 -13.99 16 11 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -24.58 11.40 55.43 0.63 -23.95 16 14 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.15 3.51 5.51 -3.69 -0.02 3.49 16 19 H 0.11 1.12 7.38 -51.92 -0.38 0.73 16 20 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 21 H 0.07 1.07 7.67 -51.92 -0.40 0.67 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.91 4.82 -51.93 -0.25 0.66 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.61 6.04 -51.93 -0.31 2.29 16 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -32.83 253.21 -7.42 -40.25 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.27 Total: -3.01 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -0.03 Total: -16.69 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.26 Total: -41.80 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.63 Total: -22.14 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 25.16 SS G_CDS: -1.55 Total: 23.61 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.83 -7.42 -40.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306860983.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.799 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds