Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42096 * 109.46946 * 2 1 4 4 N 1.65606 * 102.99919 * 250.94460 * 2 1 3 5 5 C 1.46921 * 120.63136 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77565 * 233.63306 * 5 4 2 7 7 C 1.53046 * 109.31128 * 305.36180 * 6 5 4 8 8 C 1.53046 * 109.53579 * 61.36447 * 7 6 5 9 9 H 1.09001 * 109.49519 * 58.58791 * 8 7 6 10 10 C 1.50695 * 109.49627 * 178.68180 * 8 7 6 11 11 H 1.08005 * 120.00279 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00043 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99770 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00037 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47335 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47123 * 120.00637 * 14 12 10 17 17 H 1.48506 * 109.47391 * 240.00214 * 14 12 10 18 18 C 1.46928 * 120.62928 * 180.02562 * 4 2 1 19 19 H 1.09001 * 109.47316 * 169.05544 * 1 2 3 20 20 H 1.08999 * 109.47391 * 289.05521 * 1 2 3 21 21 H 1.09006 * 109.47262 * 49.05681 * 1 2 3 22 22 H 1.08996 * 109.58905 * 113.84360 * 5 4 2 23 23 H 1.09001 * 109.70481 * 353.48713 * 5 4 2 24 24 H 1.09002 * 109.49998 * 185.41388 * 6 5 4 25 25 H 1.08995 * 109.52901 * 65.32798 * 6 5 4 26 26 H 1.08993 * 109.45866 * 181.38621 * 7 6 5 27 27 H 1.09000 * 109.45949 * 301.34958 * 7 6 5 28 28 H 0.97004 * 119.99697 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.58351 * 246.16001 * 18 4 2 30 30 H 1.09002 * 109.58642 * 6.43657 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 7 2.1865 -0.5268 -1.5252 5 6 1.1231 -0.8573 -2.4836 6 6 1.3591 -2.2755 -3.0124 7 6 2.7747 -2.3728 -3.5860 8 6 3.7953 -2.0934 -2.4803 9 1 3.6599 -2.8105 -1.6706 10 6 5.1892 -2.2211 -3.0385 11 1 5.3334 -2.4757 -4.0781 12 6 6.2805 -2.0119 -2.2222 13 7 6.1049 -1.7014 -0.9564 14 14 8.0083 -2.1696 -2.9143 15 1 7.9343 -2.5243 -4.3544 16 1 8.7235 -0.8774 -2.7593 17 1 8.7410 -3.2320 -2.1795 18 6 3.5868 -0.6726 -1.9456 19 1 -0.3634 -1.0090 -0.1951 20 1 -0.3634 0.3355 0.9713 21 1 -0.3634 0.6735 -0.7763 22 1 1.1454 -0.1498 -3.3125 23 1 0.1535 -0.8088 -1.9879 24 1 0.6335 -2.4976 -3.7948 25 1 1.2466 -2.9914 -2.1981 26 1 2.9367 -3.3739 -3.9852 27 1 2.8942 -1.6400 -4.3840 28 1 6.8728 -1.5546 -0.3820 29 1 3.8097 0.0499 -2.7307 30 1 4.2440 -0.5004 -1.0933 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306860983.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -66.706154 kcal Electronic energy + Delta-G solvation = -13412.797940 eV Core-core repulsion = 11140.337481 eV Total energy + Delta-G solvation = -2272.460459 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07401 -36.58524 -35.06146 -32.78371 -31.73760 -29.59769 -26.84039 -24.77750 -23.21345 -20.73155 -18.86137 -18.15119 -17.33648 -16.50835 -16.19322 -15.36337 -15.07897 -14.80646 -14.66341 -14.21858 -14.01447 -13.58373 -13.45561 -12.91403 -12.87263 -12.53616 -12.23655 -12.13964 -11.93621 -11.65470 -11.43546 -10.87960 -10.73437 -10.45719 -9.72373 -8.66426 -8.09683 -6.19965 1.07033 1.41678 1.44589 1.54468 1.72574 2.45303 3.18430 3.20365 3.96655 4.26197 4.35152 4.39662 4.52877 4.67522 4.67994 4.86498 4.98232 5.12664 5.17260 5.26764 5.28244 5.44452 5.57373 5.75011 5.95826 5.97907 6.12787 6.46995 6.91209 7.47501 8.96393 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.010152 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.259643 B = 2757.358254 C = 3305.217263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.514 4.514 2 S 1.514 4.486 3 O -0.984 6.984 4 N -0.898 5.898 5 C 0.109 3.891 6 C -0.119 4.119 7 C -0.104 4.104 8 C 0.039 3.961 9 H 0.021 0.979 10 C -0.535 4.535 11 H 0.050 0.950 12 C 0.016 3.984 13 N -0.914 5.914 14 Si 0.950 3.050 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.163 3.837 19 H 0.144 0.856 20 H 0.124 0.876 21 H 0.068 0.932 22 H 0.026 0.974 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.263 0.737 29 H -0.009 1.009 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 -3.442 2.138 12.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.672 4.672 2 S 1.621 4.379 3 O -0.968 6.968 4 N -0.734 5.734 5 C -0.017 4.017 6 C -0.158 4.158 7 C -0.142 4.142 8 C 0.019 3.981 9 H 0.039 0.961 10 C -0.574 4.574 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.214 1.214 17 H -0.200 1.200 18 C 0.036 3.964 19 H 0.162 0.838 20 H 0.142 0.858 21 H 0.087 0.913 22 H 0.044 0.956 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.905 -3.045 2.971 11.705 hybrid contribution 0.474 1.640 -1.909 2.561 sum -10.431 -1.405 1.062 10.579 Atomic orbital electron populations 1.28069 1.22227 1.09119 1.07769 1.69807 0.84957 0.93340 0.89786 1.92844 1.76416 1.44609 1.82971 1.55228 1.09939 1.80482 1.27764 1.21743 0.90932 0.96227 0.92822 1.21847 0.96292 0.96475 1.01207 1.21465 0.95360 0.99643 0.97743 1.18945 0.92668 0.92272 0.94198 0.96057 1.21609 0.92394 1.47201 0.96223 0.93140 1.25700 1.02636 0.94794 0.95234 1.69935 1.31353 1.48405 1.05680 0.85628 0.80493 0.77503 0.78755 1.19418 1.21361 1.20041 1.21147 0.79607 0.97431 0.98218 0.83808 0.85751 0.91317 0.95597 0.87464 0.89766 0.90346 0.92952 0.95080 0.92753 0.99017 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -10.94 9.00 113.37 1.02 -9.92 16 2 S 1.51 49.49 14.44 -56.49 -0.82 48.68 16 3 O -0.98 -47.24 18.01 -148.98 -2.68 -49.92 16 4 N -0.90 -34.68 3.25 -513.02 -1.67 -36.34 16 5 C 0.11 3.38 6.33 86.36 0.55 3.93 16 6 C -0.12 -3.50 6.08 30.67 0.19 -3.32 16 7 C -0.10 -4.12 5.11 30.63 0.16 -3.96 16 8 C 0.04 1.91 2.25 -11.45 -0.03 1.89 16 9 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 10 C -0.54 -29.20 8.56 25.60 0.22 -28.98 16 11 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 12 C 0.02 0.85 5.30 84.65 0.45 1.30 16 13 N -0.91 -51.58 11.40 21.45 0.24 -51.34 16 14 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.16 8.02 5.51 86.37 0.48 8.50 16 19 H 0.14 2.10 7.38 -2.39 -0.02 2.08 16 20 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 22 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.11 2.43 4.82 -2.39 -0.01 2.42 16 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 30 H 0.07 3.93 6.04 -2.39 -0.01 3.92 16 Total: -1.00 -73.52 253.21 1.24 -72.28 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.11 Total: 1.56 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.03 Total: -30.56 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -1.42 Total: -87.68 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.68 Total: -49.92 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.82 Total: 48.68 kcal Total: -73.52 1.24 -72.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306860983.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.571 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds