Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42094 * 109.47086 * 2 1 4 4 N 1.65601 * 102.99592 * 250.94505 * 2 1 3 5 5 C 1.36946 * 119.99736 * 119.32638 * 4 2 1 6 6 H 1.07998 * 120.00124 * 227.45127 * 5 4 2 7 7 C 1.38816 * 119.99985 * 47.45201 * 5 4 2 8 8 N 1.31615 * 119.99911 * 14.60186 * 7 5 4 9 9 Si 1.86795 * 120.00008 * 194.60170 * 7 5 4 10 10 H 1.48498 * 109.47070 * 59.99731 * 9 7 5 11 11 H 1.48499 * 109.47271 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47218 * 300.00439 * 9 7 5 13 13 C 1.46497 * 120.00654 * 299.32161 * 4 2 1 14 14 C 1.54960 * 110.92431 * 126.54174 * 13 4 2 15 15 C 1.54269 * 104.15913 * 156.30282 * 14 13 4 16 16 C 1.53872 * 106.63798 * 336.44079 * 15 14 13 17 17 C 1.54262 * 106.59941 * 359.97438 * 16 15 14 18 18 H 1.08999 * 109.46827 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.46592 * 300.00090 * 1 2 3 20 20 H 1.09003 * 109.46922 * 59.99857 * 1 2 3 21 21 H 0.97001 * 119.99692 * 174.97203 * 8 7 5 22 22 H 1.09007 * 110.66827 * 3.23807 * 13 4 2 23 23 H 1.08996 * 110.47793 * 37.64426 * 14 13 4 24 24 H 1.08999 * 110.53152 * 274.98038 * 14 13 4 25 25 H 1.09004 * 110.02850 * 217.13553 * 15 14 13 26 26 H 1.08998 * 110.03464 * 95.75888 * 15 14 13 27 27 H 1.09007 * 110.02625 * 119.26461 * 16 15 14 28 28 H 1.08995 * 110.03522 * 240.64033 * 16 15 14 29 29 H 1.09000 * 110.48851 * 142.28919 * 17 16 15 30 30 H 1.09008 * 110.48336 * 264.79416 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 7 2.1865 -0.5268 -1.5252 5 6 2.9065 0.2754 -2.3699 6 1 2.5773 0.4204 -3.3882 7 6 4.0594 0.9022 -1.9172 8 7 4.6210 0.5139 -0.7920 9 14 4.8137 2.2966 -2.9050 10 1 3.8303 3.4021 -3.0313 11 1 6.0302 2.7923 -2.2124 12 1 5.1804 1.8037 -4.2569 13 6 1.7459 -1.8509 -1.9709 14 6 0.9650 -1.7541 -3.3058 15 6 1.1111 -3.1567 -3.9312 16 6 2.3789 -3.7807 -3.3221 17 6 2.9603 -2.7354 -2.3479 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 5.4653 0.9011 -0.5125 22 1 1.1399 -2.3332 -1.2037 23 1 1.4100 -0.9991 -3.9540 24 1 -0.0846 -1.5271 -3.1191 25 1 1.2183 -3.0740 -5.0127 26 1 0.2410 -3.7665 -3.6881 27 1 2.1239 -4.6929 -2.7826 28 1 3.1010 -4.0017 -4.1081 29 1 3.3661 -3.2238 -1.4619 30 1 3.7296 -2.1410 -2.8408 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307062607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = -62.605564 kcal Electronic energy + Delta-G solvation = -13676.407325 eV Core-core repulsion = 11404.124682 eV Total energy + Delta-G solvation = -2272.282644 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08618 -36.27558 -35.24960 -32.85909 -29.39033 -29.13686 -28.07199 -25.72778 -21.20702 -20.81201 -19.80393 -17.58858 -17.11127 -16.57542 -15.96588 -15.68952 -15.16296 -14.43342 -14.13881 -13.98674 -13.58861 -13.41801 -13.11901 -12.89486 -12.76308 -12.37283 -12.09433 -11.88672 -11.82953 -11.69057 -11.29942 -11.00957 -10.80366 -10.55998 -9.48536 -8.34740 -8.08501 -5.79938 1.30610 1.39348 1.41527 1.82912 2.40928 2.52835 3.28565 3.78917 4.06397 4.08770 4.24791 4.54583 4.64224 4.78106 4.83541 4.95048 4.98817 5.06942 5.22794 5.28993 5.31152 5.37864 5.48074 5.63410 5.70301 5.77832 6.23219 6.54379 7.40347 7.83475 8.95064 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.025929 B = 0.015305 C = 0.011299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.598128 B = 1829.000110 C = 2477.479314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 S 1.492 4.508 3 O -0.930 6.930 4 N -0.734 5.734 5 C -0.305 4.305 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.888 5.888 9 Si 0.953 3.047 10 H -0.297 1.297 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.150 3.850 14 C -0.137 4.137 15 C -0.112 4.112 16 C -0.115 4.115 17 C -0.119 4.119 18 H 0.120 0.880 19 H 0.082 0.918 20 H 0.035 0.965 21 H 0.261 0.739 22 H 0.104 0.896 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 -11.093 -0.438 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.711 4.711 2 S 1.593 4.407 3 O -0.916 6.916 4 N -0.555 5.555 5 C -0.441 4.441 6 H 0.062 0.938 7 C -0.180 4.180 8 N -0.528 5.528 9 Si 0.781 3.219 10 H -0.224 1.224 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.042 3.958 14 C -0.177 4.177 15 C -0.150 4.150 16 C -0.153 4.153 17 C -0.159 4.159 18 H 0.139 0.861 19 H 0.101 0.899 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.121 0.879 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.917 -10.689 0.410 11.772 hybrid contribution -0.400 2.677 -1.986 3.358 sum -5.317 -8.011 -1.576 9.743 Atomic orbital electron populations 1.28788 1.32459 1.06740 1.03131 1.68766 0.81425 0.96050 0.94425 1.92881 1.74848 1.40633 1.83192 1.50539 1.59149 1.17407 1.28437 1.18587 1.04563 1.25622 0.95364 0.93770 1.25827 0.96307 0.99003 0.96878 1.69580 1.17412 1.42574 1.23232 0.85622 0.77119 0.80160 0.79014 1.22394 1.20939 1.18721 1.21916 0.94594 0.83746 0.95586 1.22677 0.99035 0.97644 0.98311 1.22026 0.98652 0.94926 0.99416 1.22069 0.96698 0.98223 0.98315 1.22496 0.98041 0.96358 0.99039 0.86126 0.89898 0.94533 0.92958 0.87857 0.94296 0.92576 0.92449 0.89942 0.89720 0.92454 0.91610 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.56 -20.49 10.54 113.37 1.20 -19.29 16 2 S 1.49 66.22 13.47 -56.49 -0.76 65.46 16 3 O -0.93 -55.42 14.75 -148.98 -2.20 -57.62 16 4 N -0.73 -34.58 2.70 -316.71 -0.86 -35.43 16 5 C -0.31 -17.00 7.50 84.03 0.63 -16.37 16 6 H 0.04 2.54 6.54 -2.91 -0.02 2.52 16 7 C 0.02 1.44 4.13 84.86 0.35 1.79 16 8 N -0.89 -52.15 11.69 21.65 0.25 -51.89 16 9 Si 0.95 48.34 29.58 68.60 2.03 50.37 16 10 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 11 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.15 5.46 3.15 46.31 0.15 5.61 16 14 C -0.14 -4.71 6.36 31.70 0.20 -4.51 16 15 C -0.11 -2.93 6.80 31.32 0.21 -2.72 16 16 C -0.11 -3.02 6.80 31.32 0.21 -2.80 16 17 C -0.12 -4.18 6.39 31.67 0.20 -3.98 16 18 H 0.12 3.42 7.87 -2.39 -0.02 3.40 16 19 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.26 14.99 8.32 -92.71 -0.77 14.22 16 22 H 0.10 2.97 7.56 -2.38 -0.02 2.96 16 23 H 0.04 1.60 6.36 -2.39 -0.02 1.59 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.71 7.31 -2.38 -0.02 1.69 16 Total: -1.00 -73.27 254.28 2.73 -70.54 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: 1.11 Total: 0.84 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.15 Total: -42.27 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -0.60 Total: -87.32 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.20 Total: -57.62 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Atomic # 16 Polarization: 66.22 SS G_CDS: -0.76 Total: 65.46 kcal Total: -73.27 2.73 -70.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307062607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.939 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds