Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.46951 * 2 1 4 4 O 1.42098 * 109.47164 * 289.05408 * 3 2 1 5 5 N 1.65598 * 102.99866 * 179.97438 * 3 2 1 6 6 C 1.47427 * 125.64796 * 359.96256 * 5 3 2 7 7 C 1.54912 * 104.83037 * 204.16569 * 6 5 3 8 8 C 1.55156 * 101.58175 * 322.98609 * 7 6 5 9 9 H 1.09004 * 110.87365 * 277.07293 * 8 7 6 10 10 C 1.50698 * 110.72340 * 153.86878 * 8 7 6 11 11 H 1.08005 * 119.99819 * 246.48229 * 10 8 7 12 12 C 1.37875 * 120.00046 * 66.47570 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47016 * 125.64804 * 180.02562 * 5 3 2 19 19 H 1.09007 * 109.46678 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.46998 * 299.99493 * 1 2 3 21 21 H 1.09001 * 109.47084 * 60.00227 * 1 2 3 22 22 H 1.09003 * 109.47085 * 239.99918 * 2 1 3 23 23 H 1.08994 * 109.47013 * 120.00447 * 2 1 3 24 24 H 1.09006 * 110.36528 * 322.99833 * 6 5 3 25 25 H 1.09000 * 110.36966 * 85.21903 * 6 5 3 26 26 H 1.09007 * 111.00540 * 204.91982 * 7 6 5 27 27 H 1.08998 * 111.01213 * 81.06248 * 7 6 5 28 28 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.88407 * 59.48975 * 18 5 3 30 30 H 1.08998 * 109.88542 * 298.32164 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8802 2.3027 -1.2663 5 7 3.7801 1.5237 0.0007 6 6 4.4988 0.2365 0.0020 7 6 5.8848 0.5568 0.6153 8 6 6.1663 1.9659 0.0298 9 1 6.5784 1.8930 -0.9767 10 6 7.0945 2.7412 0.9290 11 1 6.7376 3.6211 1.4436 12 6 8.3991 2.3272 1.0947 13 7 8.8337 1.2559 0.4677 14 14 9.5494 3.2878 2.2097 15 1 10.8864 2.6416 2.2166 16 1 9.0007 3.3057 3.5896 17 1 9.6757 4.6802 1.7092 18 6 4.7661 2.6142 0.0015 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.9710 -0.4921 0.6174 25 1 4.6098 -0.1371 -1.0159 26 1 6.6346 -0.1612 0.2828 27 1 5.8326 0.5892 1.7035 28 1 8.2363 0.7569 -0.1110 29 1 4.6283 3.2379 0.8847 30 1 4.6545 3.2156 -0.9007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307279361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = -47.658494 kcal Electronic energy + Delta-G solvation = -13031.284403 eV Core-core repulsion = 10759.649913 eV Total energy + Delta-G solvation = -2271.634490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.51066 -35.26994 -33.06274 -32.75545 -29.16889 -28.38477 -24.38490 -23.22273 -21.29785 -19.83900 -17.52735 -16.91794 -16.06636 -15.36500 -14.81170 -14.51573 -13.75256 -13.29337 -12.81223 -12.56329 -12.28870 -12.17055 -12.06221 -11.75910 -11.39645 -11.08536 -10.86795 -10.66151 -10.12997 -10.05241 -9.84926 -9.56414 -8.63437 -8.49591 -8.35603 -7.44655 -6.36152 -4.08517 2.10117 2.75578 3.43550 3.45114 3.63688 4.24802 4.52438 4.95024 5.03075 5.32142 5.34855 5.45903 5.73218 5.85345 5.88772 5.95204 5.99727 6.14568 6.30312 6.58625 6.84339 6.94036 7.03215 7.15066 7.23002 7.61848 8.19502 8.40751 8.84968 9.63576 11.02027 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.067721 B = 0.007081 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.364817 B = 3953.131570 C = 4116.059944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.489 4.489 3 S 1.506 4.494 4 O -0.908 6.908 5 N -0.905 5.905 6 C 0.113 3.887 7 C -0.118 4.118 8 C 0.029 3.971 9 H 0.025 0.975 10 C -0.592 4.592 11 H 0.052 0.948 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 1.069 2.931 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.288 1.288 18 C 0.141 3.859 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.271 0.729 29 H 0.057 0.943 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 -2.022 4.580 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.624 4.624 3 S 1.610 4.390 4 O -0.892 6.892 5 N -0.742 5.742 6 C -0.014 4.014 7 C -0.158 4.158 8 C 0.009 3.991 9 H 0.043 0.957 10 C -0.630 4.630 11 H 0.071 0.929 12 C -0.184 4.184 13 N -0.548 5.548 14 Si 0.897 3.103 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.215 1.215 18 C 0.015 3.985 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.100 0.900 23 H 0.130 0.870 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.892 -1.103 5.053 12.968 hybrid contribution -0.932 -1.422 -2.467 2.996 sum -12.824 -2.525 2.586 13.324 Atomic orbital electron populations 1.21278 0.92483 1.02672 1.02185 1.28065 1.03454 1.23772 1.07080 1.70293 0.77620 0.84636 1.06407 1.92930 1.79877 1.68095 1.48263 1.55967 1.17420 1.10943 1.89896 1.22121 0.95181 0.85684 0.98385 1.22911 0.92706 0.99899 1.00284 1.19846 0.90718 0.91914 0.96600 0.95652 1.21894 0.97493 1.13452 1.30201 0.92933 1.25804 0.97091 0.97022 0.98483 1.70802 1.39576 1.16572 1.27852 0.83544 0.76005 0.75227 0.75525 1.20885 1.21386 1.21482 1.21776 0.89416 0.88588 0.98686 0.92084 0.91499 0.92618 0.90003 0.86976 0.92791 0.94734 0.91881 0.91459 0.91751 0.92492 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.92 37.16 0.37 -0.92 16 2 C -0.49 -6.01 5.42 37.16 0.20 -5.81 16 3 S 1.51 22.27 14.24 -107.50 -1.53 20.74 16 4 O -0.91 -19.32 18.05 -35.23 -0.64 -19.96 16 5 N -0.90 -16.93 3.65 -111.42 -0.41 -17.34 16 6 C 0.11 2.11 6.55 -2.53 -0.02 2.09 16 7 C -0.12 -2.60 5.87 -24.58 -0.14 -2.75 16 8 C 0.03 0.73 2.43 -89.93 -0.22 0.51 16 9 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 10 C -0.59 -16.05 8.47 -34.44 -0.29 -16.35 16 11 H 0.05 1.40 7.53 -52.48 -0.40 1.00 16 12 C 0.02 0.57 5.36 -17.82 -0.10 0.47 16 13 N -0.91 -26.77 13.49 55.43 0.75 -26.02 16 14 Si 1.07 24.43 29.90 -169.99 -5.08 19.35 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.14 3.06 6.90 -3.06 -0.02 3.04 16 19 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.08 1.18 8.13 -51.92 -0.42 0.76 16 23 H 0.11 1.16 7.41 -51.93 -0.38 0.77 16 24 H 0.05 0.82 6.79 -51.93 -0.35 0.47 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.45 6.78 -51.93 -0.35 1.10 16 27 H 0.07 1.49 8.04 -51.93 -0.42 1.08 16 28 H 0.27 7.88 5.60 -40.82 -0.23 7.65 16 29 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -34.59 258.10 -7.51 -42.10 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.27 Total: -3.05 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.22 Total: -19.70 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.34 Total: -43.36 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.64 Total: -19.96 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Atomic # 16 Polarization: 22.27 SS G_CDS: -1.53 Total: 20.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.59 -7.51 -42.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307279361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.561 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds