Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.46951 * 2 1 4 4 O 1.42098 * 109.47164 * 289.05408 * 3 2 1 5 5 N 1.65598 * 102.99866 * 179.97438 * 3 2 1 6 6 C 1.47427 * 125.64796 * 359.96256 * 5 3 2 7 7 C 1.54912 * 104.83037 * 204.16569 * 6 5 3 8 8 C 1.55156 * 101.58175 * 322.98609 * 7 6 5 9 9 H 1.09004 * 110.87365 * 277.07293 * 8 7 6 10 10 C 1.50698 * 110.72340 * 153.86878 * 8 7 6 11 11 H 1.08005 * 119.99819 * 246.48229 * 10 8 7 12 12 C 1.37875 * 120.00046 * 66.47570 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47016 * 125.64804 * 180.02562 * 5 3 2 19 19 H 1.09007 * 109.46678 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.46998 * 299.99493 * 1 2 3 21 21 H 1.09001 * 109.47084 * 60.00227 * 1 2 3 22 22 H 1.09003 * 109.47085 * 239.99918 * 2 1 3 23 23 H 1.08994 * 109.47013 * 120.00447 * 2 1 3 24 24 H 1.09006 * 110.36528 * 322.99833 * 6 5 3 25 25 H 1.09000 * 110.36966 * 85.21903 * 6 5 3 26 26 H 1.09007 * 111.00540 * 204.91982 * 7 6 5 27 27 H 1.08998 * 111.01213 * 81.06248 * 7 6 5 28 28 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.88407 * 59.48975 * 18 5 3 30 30 H 1.08998 * 109.88542 * 298.32164 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8802 2.3027 -1.2663 5 7 3.7801 1.5237 0.0007 6 6 4.4988 0.2365 0.0020 7 6 5.8848 0.5568 0.6153 8 6 6.1663 1.9659 0.0298 9 1 6.5784 1.8930 -0.9767 10 6 7.0945 2.7412 0.9290 11 1 6.7376 3.6211 1.4436 12 6 8.3991 2.3272 1.0947 13 7 8.8337 1.2559 0.4677 14 14 9.5494 3.2878 2.2097 15 1 10.8864 2.6416 2.2166 16 1 9.0007 3.3057 3.5896 17 1 9.6757 4.6802 1.7092 18 6 4.7661 2.6142 0.0015 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.9710 -0.4921 0.6174 25 1 4.6098 -0.1371 -1.0159 26 1 6.6346 -0.1612 0.2828 27 1 5.8326 0.5892 1.7035 28 1 8.2363 0.7569 -0.1110 29 1 4.6283 3.2379 0.8847 30 1 4.6545 3.2156 -0.9007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307279361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = -72.600825 kcal Electronic energy + Delta-G solvation = -13032.365984 eV Core-core repulsion = 10759.649913 eV Total energy + Delta-G solvation = -2272.716071 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25383 -36.76937 -35.04652 -33.70152 -30.99637 -30.09193 -26.30136 -24.34027 -22.92783 -21.70787 -19.19781 -18.60145 -17.51469 -17.01166 -16.01752 -15.81248 -15.59472 -14.65359 -14.52665 -14.08911 -13.89794 -13.71387 -13.46891 -13.18170 -12.78965 -12.63499 -12.42497 -12.16778 -11.90281 -11.71958 -11.59825 -11.32761 -10.57336 -10.45691 -10.01575 -8.88157 -8.56270 -6.29507 0.84375 1.48954 1.59511 1.66958 1.85648 2.62618 2.98872 3.23755 3.80556 4.01629 4.11423 4.17030 4.30070 4.42290 4.51354 4.60042 4.77807 4.92960 4.99638 5.02241 5.16559 5.18660 5.29637 5.41164 5.50327 5.72030 6.10547 6.24827 6.65515 7.51280 8.82392 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.067721 B = 0.007081 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.364817 B = 3953.131570 C = 4116.059944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.478 4.478 3 S 1.553 4.447 4 O -0.971 6.971 5 N -0.909 5.909 6 C 0.119 3.881 7 C -0.109 4.109 8 C 0.015 3.985 9 H -0.015 1.015 10 C -0.602 4.602 11 H 0.056 0.944 12 C -0.029 4.029 13 N -0.939 5.939 14 Si 1.116 2.884 15 H -0.289 1.289 16 H -0.264 1.264 17 H -0.276 1.276 18 C 0.150 3.850 19 H 0.078 0.922 20 H 0.100 0.900 21 H 0.037 0.963 22 H 0.062 0.938 23 H 0.145 0.855 24 H 0.101 0.899 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.259 0.741 29 H 0.073 0.927 30 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 -2.468 6.566 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.616 4.616 3 S 1.660 4.340 4 O -0.956 6.956 5 N -0.744 5.744 6 C -0.008 4.008 7 C -0.149 4.149 8 C -0.005 4.005 9 H 0.003 0.997 10 C -0.640 4.640 11 H 0.074 0.926 12 C -0.228 4.228 13 N -0.577 5.577 14 Si 0.938 3.062 15 H -0.215 1.215 16 H -0.189 1.189 17 H -0.201 1.201 18 C 0.023 3.977 19 H 0.097 0.903 20 H 0.119 0.881 21 H 0.057 0.943 22 H 0.082 0.918 23 H 0.163 0.837 24 H 0.119 0.881 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -13.399 -1.527 7.035 15.210 hybrid contribution -0.561 -1.364 -3.113 3.445 sum -13.960 -2.891 3.922 14.786 Atomic orbital electron populations 1.21406 0.90455 1.04190 1.03099 1.27961 1.05221 1.20648 1.07785 1.69551 0.74689 0.85831 1.03903 1.92837 1.80369 1.71447 1.50919 1.56063 1.18356 1.10005 1.89989 1.22103 0.93739 0.86561 0.98360 1.22702 0.94484 0.97518 1.00153 1.19852 0.92197 0.94197 0.94276 0.99664 1.22248 0.98184 1.13597 1.30003 0.92593 1.27233 0.99164 0.97128 0.99233 1.70914 1.39621 1.17938 1.29190 0.82939 0.73883 0.74374 0.75008 1.21494 1.18883 1.20112 1.21485 0.88595 0.89200 0.98426 0.90282 0.88142 0.94342 0.91846 0.83732 0.88107 0.95869 0.93653 0.91341 0.92997 0.90872 0.96837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.92 71.98 0.71 -1.46 16 2 C -0.48 -10.03 5.42 71.98 0.39 -9.64 16 3 S 1.55 42.85 14.24 -56.49 -0.80 42.05 16 4 O -0.97 -40.95 18.05 -148.98 -2.69 -43.64 16 5 N -0.91 -32.83 3.65 -506.41 -1.85 -34.68 16 6 C 0.12 4.24 6.55 86.86 0.57 4.81 16 7 C -0.11 -4.79 5.87 31.99 0.19 -4.60 16 8 C 0.01 0.76 2.43 -10.35 -0.03 0.73 16 9 H -0.01 -0.86 7.91 -2.38 -0.02 -0.88 16 10 C -0.60 -32.90 8.47 25.60 0.22 -32.68 16 11 H 0.06 2.95 7.53 -2.91 -0.02 2.93 16 12 C -0.03 -1.64 5.36 84.65 0.45 -1.18 16 13 N -0.94 -56.30 13.49 21.45 0.29 -56.01 16 14 Si 1.12 48.66 29.90 68.60 2.05 50.71 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 18 C 0.15 6.52 6.90 86.73 0.60 7.12 16 19 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 20 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 23 H 0.14 2.18 7.41 -2.39 -0.02 2.16 16 24 H 0.10 2.67 6.79 -2.38 -0.02 2.65 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 2.13 6.78 -2.38 -0.02 2.11 16 27 H 0.07 2.97 8.04 -2.39 -0.02 2.95 16 28 H 0.26 15.69 5.60 -92.71 -0.52 15.17 16 29 H 0.07 2.93 7.63 -2.39 -0.02 2.92 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -76.54 258.10 1.46 -75.08 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.36 Total: 3.39 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.11 Total: -36.90 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -1.56 Total: -90.69 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.69 Total: -43.64 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.05 Total: 50.71 kcal Atomic # 16 Polarization: 42.85 SS G_CDS: -0.80 Total: 42.05 kcal Total: -76.54 1.46 -75.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307279361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.480 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds