Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48505 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46789 * 299.99513 * 3 2 1 6 6 H 1.48501 * 109.47143 * 59.99793 * 3 2 1 7 7 C 1.40056 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00104 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99738 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99927 * 179.97438 * 9 7 2 12 12 C 1.47417 * 125.64798 * 0.02562 * 11 9 7 13 13 C 1.54906 * 104.83374 * 204.09112 * 12 11 9 14 14 H 1.09002 * 111.00852 * 204.87879 * 13 12 11 15 15 F 1.39905 * 111.00261 * 81.06734 * 13 12 11 16 16 C 1.55158 * 101.61800 * 322.97469 * 13 12 11 17 17 C 1.47014 * 125.64586 * 179.97438 * 11 9 7 18 18 H 1.09004 * 109.88447 * 59.40632 * 17 11 9 19 19 C 1.52998 * 109.88688 * 298.39692 * 17 11 9 20 20 O 1.42892 * 109.47397 * 66.45242 * 19 17 11 21 21 H 0.97001 * 119.99782 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.36558 * 85.25641 * 12 11 9 23 23 H 1.09000 * 110.46385 * 322.98023 * 12 11 9 24 24 H 1.09001 * 110.72184 * 153.88046 * 16 13 12 25 25 H 1.09005 * 110.72041 * 277.15658 * 16 13 12 26 26 H 1.08999 * 109.47242 * 186.45942 * 19 17 11 27 27 H 1.09011 * 109.46865 * 306.45428 * 19 17 11 28 28 H 0.96702 * 114.00441 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7009 1.3462 0.0006 5 1 1.8822 2.3963 -1.2126 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 3.4159 -3.7930 0.0011 13 6 3.6762 -5.1922 -0.6104 14 1 4.6337 -5.5924 -0.2770 15 9 3.6130 -5.1487 -2.0073 16 6 2.4965 -6.0131 -0.0256 17 6 1.3425 -4.9871 0.0011 18 1 0.7140 -5.1099 -0.8810 19 6 0.5051 -5.1788 1.2671 20 8 -0.6162 -4.2935 1.2351 21 1 -0.4850 0.8401 -0.0004 22 1 3.8013 -3.7464 1.0196 23 1 3.8756 -3.0189 -0.6134 24 1 2.2517 -6.8533 -0.6755 25 1 2.7288 -6.3584 0.9818 26 1 0.1532 -6.2092 1.3174 27 1 1.1157 -4.9602 2.1432 28 1 -1.1924 -4.3604 2.0088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307574500.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = -127.818455 kcal Electronic energy + Delta-G solvation = -15347.208438 eV Core-core repulsion = 12505.884775 eV Total energy + Delta-G solvation = -2841.323663 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.24340 -38.45368 -35.65286 -35.05420 -32.35658 -30.40795 -29.22096 -26.07718 -24.62745 -21.87672 -20.81463 -18.67718 -16.83435 -16.43121 -16.26142 -15.59180 -14.83133 -14.55957 -14.34395 -13.84690 -13.57049 -12.87704 -12.47628 -12.22332 -11.78662 -11.37846 -11.34389 -10.99868 -10.89842 -10.57307 -10.52073 -10.42217 -10.21030 -10.01892 -9.15883 -8.76516 -7.35486 -7.08743 -6.08219 -4.53256 3.17290 3.24985 3.29266 4.12539 4.45967 4.61904 4.66336 4.71109 4.91905 5.08778 5.32118 5.64250 5.78520 5.80930 5.85659 5.87223 6.02643 6.13191 6.31032 6.52378 6.71141 7.39454 7.51889 8.19806 8.47936 8.51593 9.11773 9.61739 10.71140 10.94528 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.011287 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.925249 B = 2480.113643 C = 3142.087584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.567 3.433 10 O -0.528 6.528 11 N -0.636 5.636 12 C 0.094 3.906 13 C 0.072 3.928 14 H 0.096 0.904 15 F -0.205 7.205 16 C -0.148 4.148 17 C 0.142 3.858 18 H 0.066 0.934 19 C 0.071 3.929 20 O -0.516 6.516 21 H 0.266 0.734 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -9.485 2.768 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.371 3.629 10 O -0.406 6.406 11 N -0.378 5.378 12 C -0.032 4.032 13 C 0.035 3.965 14 H 0.114 0.886 15 F -0.186 7.186 16 C -0.187 4.187 17 C 0.036 3.964 18 H 0.084 0.916 19 C -0.009 4.009 20 O -0.317 6.317 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.925 -9.087 2.144 11.058 hybrid contribution 0.384 0.515 0.537 0.837 sum 6.309 -8.572 2.681 10.976 Atomic orbital electron populations 1.70042 1.06902 1.26902 1.35954 1.25686 0.94604 1.00081 0.92818 0.86361 0.80472 0.82046 0.78127 1.18884 1.20220 1.20268 1.20919 0.93378 0.89145 1.54494 0.91625 1.18069 0.87110 0.80799 0.76885 1.90693 1.12952 1.84641 1.52288 1.48971 1.03497 1.04351 1.81019 1.22477 0.86037 0.94762 0.99876 1.22761 0.99196 0.98438 0.76118 0.88648 1.92812 1.97725 1.97454 1.30616 1.23202 0.95195 0.98071 1.02210 1.21181 0.93133 0.84963 0.97097 0.91585 1.22485 0.89205 0.91523 0.97644 1.87239 1.37754 1.61837 1.44828 0.92328 0.91958 0.89999 0.89680 0.89421 0.95163 0.94764 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.59 11.83 55.55 0.66 -22.93 15 2 C 0.09 2.49 5.50 -17.36 -0.10 2.40 15 3 Si 0.91 20.66 29.56 -169.99 -5.02 15.63 15 4 H -0.26 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 7 C -0.54 -15.78 8.99 -35.63 -0.32 -16.10 15 8 H 0.07 1.76 6.64 -52.49 -0.35 1.42 15 9 C 0.57 16.74 7.52 -12.99 -0.10 16.64 15 10 O -0.53 -17.44 12.29 -18.92 -0.23 -17.67 15 11 N -0.64 -15.09 3.06 -164.61 -0.50 -15.59 15 12 C 0.09 1.75 6.33 -2.54 -0.02 1.73 15 13 C 0.07 1.07 4.86 -24.58 -0.12 0.95 15 14 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 15 F -0.21 -3.65 17.24 2.25 0.04 -3.61 15 16 C -0.15 -2.10 6.30 -24.84 -0.16 -2.25 15 17 C 0.14 2.82 3.30 -66.90 -0.22 2.60 15 18 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 19 C 0.07 1.32 6.47 37.16 0.24 1.56 15 20 O -0.52 -11.73 10.32 -59.35 -0.61 -12.34 15 21 H 0.27 7.40 8.29 -40.82 -0.34 7.06 15 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 23 H 0.08 1.61 7.15 -51.93 -0.37 1.24 15 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.09 1.00 7.85 -51.93 -0.41 0.59 15 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 27 H 0.03 0.61 8.14 -51.92 -0.42 0.19 15 28 H 0.35 6.19 9.12 45.56 0.42 6.60 15 LS Contribution 242.79 15.07 3.66 3.66 Total: -1.00 -37.08 242.79 -5.19 -42.27 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -2.38 Total: 3.04 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.79 Total: 7.54 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.15 Total: -38.52 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.85 Total: -30.01 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -37.08 -5.19 -42.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574500.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.553 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds