Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48505 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46789 * 299.99513 * 3 2 1 6 6 H 1.48501 * 109.47143 * 59.99793 * 3 2 1 7 7 C 1.40056 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00104 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99738 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99927 * 179.97438 * 9 7 2 12 12 C 1.47417 * 125.64798 * 0.02562 * 11 9 7 13 13 C 1.54906 * 104.83374 * 204.09112 * 12 11 9 14 14 H 1.09002 * 111.00852 * 204.87879 * 13 12 11 15 15 F 1.39905 * 111.00261 * 81.06734 * 13 12 11 16 16 C 1.55158 * 101.61800 * 322.97469 * 13 12 11 17 17 C 1.47014 * 125.64586 * 179.97438 * 11 9 7 18 18 H 1.09004 * 109.88447 * 59.40632 * 17 11 9 19 19 C 1.52998 * 109.88688 * 298.39692 * 17 11 9 20 20 O 1.42892 * 109.47397 * 66.45242 * 19 17 11 21 21 H 0.97001 * 119.99782 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.36558 * 85.25641 * 12 11 9 23 23 H 1.09000 * 110.46385 * 322.98023 * 12 11 9 24 24 H 1.09001 * 110.72184 * 153.88046 * 16 13 12 25 25 H 1.09005 * 110.72041 * 277.15658 * 16 13 12 26 26 H 1.08999 * 109.47242 * 186.45942 * 19 17 11 27 27 H 1.09011 * 109.46865 * 306.45428 * 19 17 11 28 28 H 0.96702 * 114.00441 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7009 1.3462 0.0006 5 1 1.8822 2.3963 -1.2126 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 3.4159 -3.7930 0.0011 13 6 3.6762 -5.1922 -0.6104 14 1 4.6337 -5.5924 -0.2770 15 9 3.6130 -5.1487 -2.0073 16 6 2.4965 -6.0131 -0.0256 17 6 1.3425 -4.9871 0.0011 18 1 0.7140 -5.1099 -0.8810 19 6 0.5051 -5.1788 1.2671 20 8 -0.6162 -4.2935 1.2351 21 1 -0.4850 0.8401 -0.0004 22 1 3.8013 -3.7464 1.0196 23 1 3.8756 -3.0189 -0.6134 24 1 2.2517 -6.8533 -0.6755 25 1 2.7288 -6.3584 0.9818 26 1 0.1532 -6.2092 1.3174 27 1 1.1157 -4.9602 2.1432 28 1 -1.1924 -4.3604 2.0088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307574500.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = -157.008411 kcal Electronic energy + Delta-G solvation = -15348.474209 eV Core-core repulsion = 12505.884775 eV Total energy + Delta-G solvation = -2842.589434 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.53540 -40.14858 -37.58294 -36.75870 -34.54632 -32.07338 -30.70441 -28.20612 -26.09094 -23.60003 -22.20770 -20.48156 -18.59755 -18.08604 -17.74507 -17.53499 -16.51599 -15.96019 -15.79564 -15.57149 -15.15372 -14.69206 -14.13411 -13.88300 -13.30428 -13.17718 -13.00909 -12.75969 -12.64464 -12.31807 -12.08927 -11.91727 -11.73342 -11.69662 -10.91038 -10.70415 -9.58617 -8.96922 -8.22359 -6.78450 1.37920 1.39287 1.55903 2.24207 2.55176 2.84316 3.29041 3.41091 3.62155 3.71744 3.95003 4.20825 4.23800 4.40341 4.44865 4.62471 4.69369 4.85175 4.86582 5.11424 5.27461 5.35558 5.68580 6.09560 6.47678 6.92022 7.11693 7.58378 8.59428 8.79883 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.011287 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.925249 B = 2480.113643 C = 3142.087584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.995 3.005 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.548 3.452 10 O -0.580 6.580 11 N -0.649 5.649 12 C 0.082 3.918 13 C 0.077 3.923 14 H 0.155 0.845 15 F -0.226 7.226 16 C -0.129 4.129 17 C 0.126 3.874 18 H 0.025 0.975 19 C 0.069 3.931 20 O -0.562 6.562 21 H 0.271 0.729 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -10.480 3.599 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.171 1.171 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.609 4.609 8 H 0.098 0.902 9 C 0.352 3.648 10 O -0.462 6.462 11 N -0.389 5.389 12 C -0.042 4.042 13 C 0.041 3.959 14 H 0.172 0.828 15 F -0.207 7.207 16 C -0.167 4.167 17 C 0.021 3.979 18 H 0.043 0.957 19 C -0.010 4.010 20 O -0.366 6.366 21 H 0.081 0.919 22 H 0.106 0.894 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.559 -10.144 2.984 13.604 hybrid contribution -0.428 0.732 0.279 0.893 sum 8.131 -9.413 3.263 12.859 Atomic orbital electron populations 1.70222 1.09368 1.28489 1.37258 1.26941 0.95538 1.04735 0.91471 0.85019 0.79325 0.75706 0.78505 1.17113 1.19557 1.19156 1.21432 0.94280 0.90101 1.55044 0.90165 1.18378 0.86901 0.82845 0.76659 1.90641 1.14974 1.86252 1.54355 1.48697 1.06057 1.04550 1.79588 1.22799 0.82791 0.97093 1.01526 1.23057 1.02259 0.95921 0.74691 0.82756 1.92782 1.97957 1.97383 1.32550 1.23236 0.91843 0.96532 1.05098 1.21563 0.95199 0.84869 0.96273 0.95675 1.22663 0.88218 0.93043 0.97069 1.87198 1.39405 1.63701 1.46324 0.91871 0.89366 0.91865 0.87465 0.85337 0.90817 0.93868 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.41 11.83 21.84 0.26 -52.16 15 2 C 0.03 1.59 5.50 85.31 0.47 2.06 15 3 Si 0.99 42.75 29.56 68.60 2.03 44.78 15 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 7 C -0.57 -34.03 8.99 24.83 0.22 -33.80 15 8 H 0.08 4.34 6.64 -2.91 -0.02 4.32 15 9 C 0.55 33.56 7.52 86.36 0.65 34.21 15 10 O -0.58 -40.32 12.29 18.75 0.23 -40.09 15 11 N -0.65 -31.00 3.06 -792.92 -2.43 -33.43 15 12 C 0.08 2.90 6.33 86.86 0.55 3.45 15 13 C 0.08 2.00 4.86 31.99 0.16 2.15 15 14 H 0.16 2.35 8.14 -2.39 -0.02 2.33 15 15 F -0.23 -7.56 17.24 44.97 0.78 -6.79 15 16 C -0.13 -3.12 6.30 31.82 0.20 -2.92 15 17 C 0.13 4.93 3.30 45.38 0.15 5.08 15 18 H 0.03 1.17 8.14 -2.38 -0.02 1.15 15 19 C 0.07 2.48 6.47 71.98 0.47 2.95 15 20 O -0.56 -26.40 10.32 -125.92 -1.30 -27.70 15 21 H 0.27 15.65 8.29 -92.71 -0.77 14.88 15 22 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.06 2.45 7.15 -2.39 -0.02 2.43 15 24 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.13 2.13 7.85 -2.38 -0.02 2.11 15 26 H 0.07 1.99 8.14 -2.39 -0.02 1.98 15 27 H 0.04 1.46 8.14 -2.38 -0.02 1.44 15 28 H 0.37 13.42 9.12 -74.06 -0.68 12.75 15 Total: -1.00 -86.84 242.79 2.93 -83.91 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.51 Total: 18.30 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 2.86 Total: 13.17 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.17 Total: -85.58 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -1.07 Total: -67.79 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.78 Total: -6.79 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -86.84 2.93 -83.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574500.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.095 kcal (2) G-P(sol) polarization free energy of solvation -86.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds