Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99785 * 2 1 4 4 O 1.20829 * 120.00372 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00049 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.99627 * 318.90508 * 5 3 2 7 7 C 1.54329 * 109.88483 * 79.99452 * 5 3 2 8 8 C 1.55153 * 103.10018 * 141.69974 * 7 5 3 9 9 H 1.09007 * 111.00166 * 206.33455 * 8 7 5 10 10 F 1.39904 * 111.00318 * 82.48924 * 8 7 5 11 11 C 1.54909 * 101.58444 * 324.41263 * 8 7 5 12 12 N 1.47416 * 104.83175 * 37.00966 * 11 8 7 13 13 C 1.36935 * 125.64867 * 155.91633 * 12 11 8 14 14 H 1.08004 * 120.00327 * 154.14737 * 13 12 11 15 15 C 1.38817 * 120.00061 * 334.14317 * 13 12 11 16 16 N 1.31614 * 120.00084 * 153.19018 * 15 13 12 17 17 Si 1.86796 * 119.99913 * 333.19488 * 15 13 12 18 18 H 1.48499 * 109.47458 * 95.01975 * 17 15 13 19 19 H 1.48500 * 109.47068 * 215.02302 * 17 15 13 20 20 H 1.48509 * 109.47144 * 335.02169 * 17 15 13 21 21 H 1.09000 * 109.47366 * 300.00453 * 1 2 3 22 22 H 1.09002 * 109.47273 * 60.00386 * 1 2 3 23 23 H 1.08996 * 109.47350 * 180.02562 * 1 2 3 24 24 H 1.09005 * 110.71546 * 23.24759 * 7 5 3 25 25 H 1.08992 * 110.72036 * 260.15537 * 7 5 3 26 26 H 1.08998 * 110.36874 * 155.85107 * 11 8 7 27 27 H 1.08998 * 110.36452 * 278.06172 * 11 8 7 28 28 H 0.96994 * 120.00324 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9786 0.5237 0.6742 7 6 4.1042 1.0504 -1.4284 8 6 5.2884 2.0487 -1.5192 9 1 5.4709 2.3453 -2.5522 10 9 6.4437 1.5101 -0.9428 11 6 4.7554 3.2403 -0.6852 12 7 4.0015 2.6204 0.4196 13 6 3.7465 3.1981 1.6347 14 1 2.8827 2.8933 2.2069 15 6 4.5983 4.1753 2.1310 16 7 4.1417 5.0834 2.9671 17 14 6.3926 4.2016 1.6122 18 1 6.5640 5.1348 0.4698 19 1 7.2307 4.6545 2.7513 20 1 6.8096 2.8363 1.2029 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.3412 1.2885 -2.1695 25 1 4.4535 0.0254 -1.5522 26 1 5.5841 3.8308 -0.2946 27 1 4.0987 3.8641 -1.2916 28 1 4.7368 5.7665 3.3137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307620393.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -122.179058 kcal Electronic energy + Delta-G solvation = -15397.239763 eV Core-core repulsion = 12556.160643 eV Total energy + Delta-G solvation = -2841.079120 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.55621 -41.46425 -38.84558 -37.14996 -34.65882 -31.84489 -30.85975 -28.34278 -26.51997 -23.92821 -22.55111 -21.22947 -19.34270 -18.67710 -17.78874 -17.53628 -17.27594 -16.76045 -16.16778 -15.76129 -15.19384 -14.92886 -14.56742 -14.11546 -14.06253 -13.76063 -13.27118 -13.03804 -12.70856 -12.67448 -12.33674 -11.96375 -11.88437 -11.71308 -11.34801 -11.26461 -10.75155 -9.20204 -8.29446 -5.59313 1.24880 1.29704 1.39610 1.55509 1.81875 2.35898 2.87533 3.09859 3.37362 3.45385 3.76815 3.94314 4.12881 4.25196 4.32476 4.35747 4.46916 4.66176 4.69290 4.79189 4.91007 5.18004 5.43222 5.58085 5.99773 6.58512 6.91741 7.38589 7.91020 8.90588 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.013414 C = 0.009960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.882699 B = 2086.826805 C = 2810.664335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.443 3.557 4 O -0.531 6.531 5 C 0.154 3.846 6 H 0.089 0.911 7 C -0.123 4.123 8 C 0.080 3.920 9 H 0.153 0.847 10 F -0.215 7.215 11 C 0.077 3.923 12 N -0.594 5.594 13 C -0.243 4.243 14 H 0.039 0.961 15 C -0.023 4.023 16 N -0.943 5.943 17 Si 0.942 3.058 18 H -0.272 1.272 19 H -0.305 1.305 20 H -0.247 1.247 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -11.393 -12.421 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.284 3.716 4 O -0.418 6.418 5 C 0.045 3.955 6 H 0.106 0.894 7 C -0.161 4.161 8 C 0.044 3.956 9 H 0.170 0.830 10 F -0.196 7.196 11 C -0.047 4.047 12 N -0.319 5.319 13 C -0.371 4.371 14 H 0.057 0.943 15 C -0.220 4.220 16 N -0.587 5.587 17 Si 0.770 3.230 18 H -0.199 1.199 19 H -0.234 1.234 20 H -0.171 1.171 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.156 0.844 24 H 0.128 0.872 25 H 0.150 0.850 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.237 -10.942 -12.216 16.402 hybrid contribution 0.144 0.760 0.750 1.077 sum -0.093 -10.182 -11.465 15.335 Atomic orbital electron populations 1.23466 0.75824 1.05492 1.01765 1.86525 1.24347 1.33101 1.84107 1.25605 0.93771 0.81050 0.71205 1.90632 1.67632 1.37936 1.45616 1.21060 0.85495 0.89413 0.99552 0.89381 1.23160 0.97452 1.02658 0.92822 1.22952 0.81592 0.92692 0.98363 0.82974 1.92802 1.51855 1.87430 1.87485 1.22809 0.95610 0.96018 0.90226 1.44605 1.63062 1.12940 1.11303 1.18232 1.05402 1.18496 0.95006 0.94331 1.25745 1.02180 0.96176 0.97850 1.70044 1.36480 1.14961 1.37218 0.85918 0.81243 0.79702 0.76143 1.19898 1.23391 1.17087 0.93796 0.91951 0.84387 0.87186 0.85005 0.93831 0.92102 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 15 2 O -0.36 -11.77 10.57 -51.41 -0.54 -12.31 15 3 C 0.44 17.73 6.88 71.23 0.49 18.22 15 4 O -0.53 -25.88 15.91 21.96 0.35 -25.54 15 5 C 0.15 5.92 3.66 44.51 0.16 6.08 15 6 H 0.09 3.33 8.14 -2.39 -0.02 3.31 15 7 C -0.12 -3.20 6.27 31.78 0.20 -3.00 15 8 C 0.08 2.32 4.86 31.98 0.16 2.48 15 9 H 0.15 2.86 8.14 -2.38 -0.02 2.84 15 10 F -0.21 -7.29 16.74 44.97 0.75 -6.54 15 11 C 0.08 3.16 6.13 86.86 0.53 3.70 15 12 N -0.59 -28.96 2.51 -671.28 -1.69 -30.64 15 13 C -0.24 -14.59 9.77 84.04 0.82 -13.77 15 14 H 0.04 2.62 8.06 -2.91 -0.02 2.60 15 15 C -0.02 -1.39 5.39 84.86 0.46 -0.94 15 16 N -0.94 -61.12 13.97 21.65 0.30 -60.82 15 17 Si 0.94 47.10 24.95 68.60 1.71 48.82 15 18 H -0.27 -12.80 6.75 99.48 0.67 -12.13 15 19 H -0.31 -15.38 7.11 99.48 0.71 -14.67 15 20 H -0.25 -11.87 6.60 99.48 0.66 -11.21 15 21 H 0.04 1.24 8.13 -2.39 -0.02 1.22 15 22 H 0.06 1.50 8.13 -2.39 -0.02 1.48 15 23 H 0.14 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.11 2.43 7.84 -2.38 -0.02 2.41 15 25 H 0.13 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.04 1.95 2.87 -2.39 -0.01 1.94 15 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.27 16.18 8.31 -92.71 -0.77 15.41 15 Total: -1.00 -78.08 242.66 5.98 -72.10 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.08 Total: 0.26 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 4.01 Total: 14.67 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.38 Total: -91.46 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.19 Total: -37.85 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.75 Total: -6.54 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.71 Total: 48.82 kcal Total: -78.08 5.98 -72.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307620393.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.076 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds