Wall clock time and date at job start Mon Mar 30 2020 02:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 S 1.65597 * 119.99794 * 179.97438 * 9 7 2 11 11 O 1.42100 * 102.99911 * 66.14958 * 10 9 7 12 12 C 1.81397 * 102.99930 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47414 * 305.00069 * 12 10 9 14 14 C 1.53000 * 109.47358 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47043 * 60.00193 * 14 13 12 16 16 C 1.52995 * 109.47146 * 299.99816 * 15 14 13 17 17 C 1.53003 * 109.47201 * 60.00470 * 16 15 14 18 18 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 19 19 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 20 20 H 1.09000 * 109.47125 * 65.00758 * 12 10 9 21 21 H 1.09000 * 109.47537 * 300.00436 * 13 12 10 22 22 H 1.09003 * 109.47158 * 59.99967 * 13 12 10 23 23 H 1.09003 * 109.46751 * 300.00045 * 14 13 12 24 24 H 1.09004 * 109.46820 * 180.02562 * 14 13 12 25 25 H 1.09008 * 109.47036 * 179.97438 * 15 14 13 26 26 H 1.09003 * 109.47468 * 60.00291 * 15 14 13 27 27 H 1.08998 * 109.47756 * 300.00396 * 16 15 14 28 28 H 1.09003 * 109.47417 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.47468 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.47319 * 59.99201 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 16 4.2075 -2.6364 -0.0011 11 8 3.8819 -3.1934 -1.2672 12 6 5.9422 -2.1061 -0.0026 13 6 6.1872 -1.1663 -1.1848 14 6 7.6502 -0.7185 -1.1858 15 6 8.5583 -1.9434 -1.3114 16 6 8.3134 -2.8832 -0.1292 17 6 6.8504 -3.3311 -0.1282 18 1 -0.4850 0.8401 0.0004 19 1 3.8646 -0.3622 -0.0014 20 1 6.1634 -1.5843 0.9284 21 1 5.9659 -1.6882 -2.1159 22 1 5.5405 -0.2934 -1.0952 23 1 7.8709 -0.1964 -0.2547 24 1 7.8245 -0.0486 -2.0278 25 1 9.6006 -1.6243 -1.3125 26 1 8.3376 -2.4655 -2.2424 27 1 8.5341 -2.3612 0.8019 28 1 8.9607 -3.7557 -0.2184 29 1 6.6758 -4.0003 0.7142 30 1 6.6296 -3.8531 -1.0593 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307725702.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:39 Heat of formation + Delta-G solvation = -56.949302 kcal Electronic energy + Delta-G solvation = -13172.452961 eV Core-core repulsion = 10900.415591 eV Total energy + Delta-G solvation = -2272.037370 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.03778 -34.58899 -34.06751 -31.10621 -30.62165 -30.46083 -23.86689 -22.47783 -22.30978 -19.62767 -18.31872 -17.14648 -15.67861 -15.14858 -14.53274 -14.17051 -14.04125 -13.85548 -13.01825 -12.77113 -12.47088 -12.12442 -11.93520 -11.79699 -11.18489 -11.02951 -10.97724 -10.71146 -10.50683 -10.31479 -10.02967 -9.86631 -9.62043 -9.24133 -8.15247 -7.18523 -6.00038 -3.51426 2.78240 3.23874 3.27410 3.32400 3.72089 4.40618 4.74172 4.82114 4.94716 5.02212 5.35941 5.37800 5.49191 5.54405 5.63379 5.67234 5.76294 5.85464 6.05980 6.19294 6.22059 6.27261 6.34813 6.37462 6.57679 7.23568 8.04326 8.64131 9.42361 9.50254 11.15325 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.009764 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.050352 B = 2867.073085 C = 3334.061434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.032 3.968 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.275 4.275 8 H 0.103 0.897 9 N -0.910 5.910 10 S 1.486 4.514 11 O -0.913 6.913 12 C -0.460 4.460 13 C -0.106 4.106 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.089 4.089 18 H 0.265 0.735 19 H 0.367 0.633 20 H 0.110 0.890 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.914 -3.436 4.077 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.169 4.169 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.407 4.407 8 H 0.121 0.879 9 N -0.661 5.661 10 S 1.586 4.414 11 O -0.896 6.896 12 C -0.572 4.572 13 C -0.144 4.144 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.128 4.128 18 H 0.075 0.925 19 H 0.197 0.803 20 H 0.128 0.872 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.248 -4.423 3.984 16.369 hybrid contribution 1.075 2.669 -1.836 3.413 sum 16.323 -1.754 2.148 16.557 Atomic orbital electron populations 1.69714 1.05331 1.26566 1.54162 1.24892 0.95214 0.97544 0.99280 0.86580 0.79599 0.84507 0.78133 1.20788 1.20973 1.19736 1.18794 0.79061 0.95618 1.47181 0.87893 1.48950 1.11786 1.16458 1.88865 1.70575 0.79874 0.83637 1.07292 1.92912 1.76985 1.72075 1.47599 1.28274 1.23242 1.02861 1.02849 1.21405 0.96440 0.98594 0.97986 1.21512 0.95356 0.97182 1.01288 1.21510 0.98639 0.96646 0.98774 1.21486 0.96404 0.98746 0.98483 1.21086 0.94033 0.95604 1.02112 0.92465 0.80292 0.87201 0.91674 0.92274 0.92126 0.92653 0.92569 0.92312 0.91977 0.92336 0.91158 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 2 C 0.03 0.92 5.50 -17.43 -0.10 0.82 16 3 Si 0.88 21.53 27.73 -169.99 -4.71 16.81 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.04 6.52 56.52 0.37 -5.67 16 7 C -0.27 -7.72 10.34 -15.06 -0.16 -7.87 16 8 H 0.10 3.09 8.05 -52.49 -0.42 2.66 16 9 N -0.91 -21.26 5.26 31.50 0.17 -21.10 16 10 S 1.49 27.86 13.40 -107.50 -1.44 26.41 16 11 O -0.91 -23.04 17.82 -35.23 -0.63 -23.67 16 12 C -0.46 -6.89 2.73 -26.73 -0.07 -6.97 16 13 C -0.11 -1.77 4.99 -26.73 -0.13 -1.91 16 14 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.12 -1.41 5.92 -26.74 -0.16 -1.57 16 16 C -0.11 -1.26 5.92 -26.73 -0.16 -1.41 16 17 C -0.09 -1.15 5.21 -26.73 -0.14 -1.29 16 18 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 19 H 0.37 8.18 4.33 -34.47 -0.15 8.04 16 20 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 21 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 22 H 0.06 1.06 6.73 -51.93 -0.35 0.72 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -35.39 254.27 -7.40 -42.79 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.31 Total: 4.07 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.07 Total: -21.91 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.94 Total: -48.34 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.63 Total: -23.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: 27.86 SS G_CDS: -1.44 Total: 26.41 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.39 -7.40 -42.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307725702.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.162 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds