Wall clock time and date at job start Mon Mar 30 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 S 1.65597 * 119.99794 * 179.97438 * 9 7 2 11 11 O 1.42100 * 102.99911 * 66.14958 * 10 9 7 12 12 C 1.81397 * 102.99930 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47414 * 305.00069 * 12 10 9 14 14 C 1.53000 * 109.47358 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47043 * 60.00193 * 14 13 12 16 16 C 1.52995 * 109.47146 * 299.99816 * 15 14 13 17 17 C 1.53003 * 109.47201 * 60.00470 * 16 15 14 18 18 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 19 19 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 20 20 H 1.09000 * 109.47125 * 65.00758 * 12 10 9 21 21 H 1.09000 * 109.47537 * 300.00436 * 13 12 10 22 22 H 1.09003 * 109.47158 * 59.99967 * 13 12 10 23 23 H 1.09003 * 109.46751 * 300.00045 * 14 13 12 24 24 H 1.09004 * 109.46820 * 180.02562 * 14 13 12 25 25 H 1.09008 * 109.47036 * 179.97438 * 15 14 13 26 26 H 1.09003 * 109.47468 * 60.00291 * 15 14 13 27 27 H 1.08998 * 109.47756 * 300.00396 * 16 15 14 28 28 H 1.09003 * 109.47417 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.47468 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.47319 * 59.99201 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 16 4.2075 -2.6364 -0.0011 11 8 3.8819 -3.1934 -1.2672 12 6 5.9422 -2.1061 -0.0026 13 6 6.1872 -1.1663 -1.1848 14 6 7.6502 -0.7185 -1.1858 15 6 8.5583 -1.9434 -1.3114 16 6 8.3134 -2.8832 -0.1292 17 6 6.8504 -3.3311 -0.1282 18 1 -0.4850 0.8401 0.0004 19 1 3.8646 -0.3622 -0.0014 20 1 6.1634 -1.5843 0.9284 21 1 5.9659 -1.6882 -2.1159 22 1 5.5405 -0.2934 -1.0952 23 1 7.8709 -0.1964 -0.2547 24 1 7.8245 -0.0486 -2.0278 25 1 9.6006 -1.6243 -1.3125 26 1 8.3376 -2.4655 -2.2424 27 1 8.5341 -2.3612 0.8019 28 1 8.9607 -3.7557 -0.2184 29 1 6.6758 -4.0003 0.7142 30 1 6.6296 -3.8531 -1.0593 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307725702.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:38 Heat of formation + Delta-G solvation = -83.068583 kcal Electronic energy + Delta-G solvation = -13173.585578 eV Core-core repulsion = 10900.415591 eV Total energy + Delta-G solvation = -2273.169987 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.12326 -36.46201 -36.07713 -33.13168 -31.72968 -31.64897 -25.92501 -23.60204 -23.47725 -20.71625 -20.35281 -18.89422 -17.20284 -16.78905 -16.16587 -15.45360 -15.25764 -15.08511 -14.87125 -14.43717 -13.99598 -13.61986 -13.32335 -13.08334 -13.00973 -12.49670 -12.28542 -12.09662 -11.94288 -11.85467 -11.59181 -11.38885 -11.07763 -10.86246 -10.21180 -8.85767 -8.20401 -5.73732 1.21309 1.31173 1.36112 1.41889 2.07063 2.35611 3.09211 3.41006 3.70611 3.78848 4.01761 4.30148 4.30852 4.47689 4.56820 4.60367 4.66113 4.91326 5.02460 5.12468 5.18699 5.20832 5.25886 5.32579 5.34196 5.53372 5.88130 6.50658 7.22466 7.38926 8.98074 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.009764 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.050352 B = 2867.073085 C = 3334.061434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.033 4.033 3 Si 0.948 3.052 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.232 1.232 7 C -0.273 4.273 8 H 0.069 0.931 9 N -0.918 5.918 10 S 1.521 4.479 11 O -0.978 6.978 12 C -0.442 4.442 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.095 4.095 18 H 0.266 0.734 19 H 0.373 0.627 20 H 0.149 0.851 21 H 0.029 0.971 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.383 -2.617 5.625 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.230 4.230 3 Si 0.772 3.228 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.156 1.156 7 C -0.405 4.405 8 H 0.086 0.914 9 N -0.667 5.667 10 S 1.626 4.374 11 O -0.962 6.962 12 C -0.558 4.558 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.134 4.134 18 H 0.075 0.925 19 H 0.204 0.796 20 H 0.167 0.833 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.689 -3.618 5.546 19.828 hybrid contribution 0.122 2.317 -2.327 3.286 sum 18.811 -1.302 3.219 19.129 Atomic orbital electron populations 1.69879 1.07347 1.27639 1.56092 1.25787 0.96148 1.01676 0.99356 0.85543 0.79982 0.79221 0.78018 1.21574 1.20474 1.15563 1.18681 0.81142 0.94465 1.46211 0.91356 1.48859 1.10288 1.18129 1.89401 1.69446 0.81395 0.81589 1.04990 1.92825 1.79822 1.73271 1.50299 1.28071 1.19401 1.04209 1.04166 1.21454 0.98919 0.97910 0.96933 1.21513 0.92906 0.98110 1.02454 1.21560 0.99582 0.96056 0.98649 1.21499 0.94737 0.99537 0.98905 1.21231 0.95085 0.94725 1.02364 0.92488 0.79585 0.83278 0.95166 0.93837 0.90102 0.92553 0.90173 0.93920 0.89844 0.90361 0.87831 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 2 C -0.03 -1.95 5.50 84.86 0.47 -1.48 16 3 Si 0.95 43.94 27.73 68.60 1.90 45.84 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.23 -9.16 6.52 99.48 0.65 -8.51 16 7 C -0.27 -15.68 10.34 84.04 0.87 -14.81 16 8 H 0.07 4.32 8.05 -2.91 -0.02 4.29 16 9 N -0.92 -42.54 5.26 -54.26 -0.29 -42.83 16 10 S 1.52 56.38 13.40 -56.49 -0.76 55.62 16 11 O -0.98 -50.77 17.82 -148.98 -2.66 -53.43 16 12 C -0.44 -11.96 2.73 30.60 0.08 -11.87 16 13 C -0.11 -3.61 4.99 30.59 0.15 -3.45 16 14 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 15 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 16 C -0.11 -1.89 5.92 30.59 0.18 -1.71 16 17 C -0.09 -2.13 5.21 30.60 0.16 -1.97 16 18 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 19 H 0.37 15.97 4.33 -96.75 -0.42 15.55 16 20 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 21 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 22 H 0.04 1.49 6.73 -2.39 -0.02 1.47 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -79.75 254.27 1.42 -78.33 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.64 Total: 17.03 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 2.28 Total: -40.03 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: 0.02 Total: -103.36 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -2.66 Total: -53.43 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Atomic # 16 Polarization: 56.38 SS G_CDS: -0.76 Total: 55.62 kcal Total: -79.75 1.42 -78.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307725702.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.742 kcal (2) G-P(sol) polarization free energy of solvation -79.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds