Wall clock time and date at job start Mon Mar 30 2020 02:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47504 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47202 * 300.00071 * 3 2 1 6 6 H 1.48506 * 109.47064 * 59.99661 * 3 2 1 7 7 C 1.38810 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99788 * 197.74382 * 7 2 1 9 9 N 1.36941 * 120.00013 * 17.75076 * 7 2 1 10 10 C 1.46373 * 119.64567 * 33.31374 * 9 7 2 11 11 C 1.53243 * 109.48876 * 114.91416 * 10 9 7 12 12 S 1.81747 * 108.79642 * 57.65547 * 11 10 9 13 13 C 1.81745 * 102.30389 * 305.46096 * 12 11 10 14 14 C 1.46377 * 119.64372 * 213.31551 * 9 7 2 15 15 H 1.09004 * 109.46718 * 125.08229 * 14 9 7 16 16 C 1.52997 * 109.46814 * 5.08952 * 14 9 7 17 17 C 1.53000 * 109.47028 * 64.98486 * 16 14 9 18 18 O 1.42906 * 109.46998 * 179.97438 * 17 16 14 19 19 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47528 * 354.90696 * 10 9 7 21 21 H 1.09000 * 109.46831 * 234.91833 * 10 9 7 22 22 H 1.08994 * 109.57970 * 297.85959 * 11 10 9 23 23 H 1.09003 * 109.58179 * 177.44755 * 11 10 9 24 24 H 1.09000 * 109.58008 * 174.33624 * 13 12 11 25 25 H 1.09001 * 109.58431 * 294.74469 * 13 12 11 26 26 H 1.09006 * 109.46569 * 184.98026 * 16 14 9 27 27 H 1.08994 * 109.47506 * 304.97991 * 16 14 9 28 28 H 1.08998 * 109.47284 * 299.99434 * 17 16 14 29 29 H 1.09001 * 109.47296 * 59.99776 * 17 16 14 30 30 H 0.96696 * 113.99656 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0518 -1.2242 0.2856 9 7 1.3745 -2.3600 -0.3605 10 6 0.3241 -2.3219 -1.3792 11 6 0.7781 -3.1115 -2.6115 12 16 1.1636 -4.8143 -2.1066 13 6 2.3676 -4.5586 -0.7694 14 6 1.7527 -3.6225 0.2764 15 1 0.8681 -4.0910 0.7079 16 6 2.7755 -3.3500 1.3811 17 6 2.1226 -2.5180 2.4868 18 8 3.0778 -2.2640 3.5189 19 1 -0.4850 0.8401 -0.0004 20 1 0.1296 -1.2873 -1.6620 21 1 -0.5869 -2.7662 -0.9784 22 1 1.6675 -2.6461 -3.0363 23 1 -0.0207 -3.1223 -3.3532 24 1 2.6082 -5.5157 -0.3066 25 1 3.2738 -4.1085 -1.1748 26 1 3.1232 -4.2963 1.7957 27 1 3.6216 -2.8025 0.9659 28 1 1.7749 -1.5718 2.0722 29 1 1.2765 -3.0656 2.9020 30 1 2.7320 -1.7405 4.2546 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335529204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:20 Heat of formation + Delta-G solvation = -33.481558 kcal Electronic energy + Delta-G solvation = -13645.668201 eV Core-core repulsion = 11374.648468 eV Total energy + Delta-G solvation = -2271.019732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.64454 -35.70530 -32.77373 -31.49480 -28.59479 -28.15436 -24.28611 -22.63360 -21.32527 -19.70735 -17.02199 -16.23004 -15.75788 -15.30390 -14.38049 -14.00106 -13.67899 -13.43677 -13.18860 -12.70773 -12.29663 -11.75433 -11.59455 -11.36022 -10.95957 -10.80734 -10.58923 -10.31113 -10.26427 -10.02246 -9.74644 -9.23786 -8.97767 -8.44338 -7.24965 -6.68350 -5.95085 -3.45602 2.51587 3.22366 3.26908 3.36808 3.39832 4.34733 4.91927 5.10743 5.20291 5.65843 5.84278 5.86250 6.00677 6.02749 6.06264 6.23054 6.28543 6.39101 6.53177 6.61234 6.99209 7.06228 7.14959 7.44349 7.69443 8.27608 8.31780 9.03764 9.64758 10.19566 11.08899 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.014473 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.311346 B = 1934.131266 C = 2779.772245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.009 3.991 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.164 3.836 11 C -0.093 4.093 12 S -0.312 6.312 13 C -0.084 4.084 14 C 0.175 3.825 15 H 0.043 0.957 16 C -0.096 4.096 17 C 0.066 3.934 18 O -0.588 6.588 19 H 0.256 0.744 20 H 0.104 0.896 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.024 0.976 30 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -4.357 0.390 4.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.036 3.964 11 C -0.243 4.243 12 S -0.085 6.085 13 C -0.235 4.235 14 C 0.067 3.933 15 H 0.061 0.939 16 C -0.136 4.136 17 C -0.011 4.011 18 O -0.393 6.393 19 H 0.066 0.934 20 H 0.122 0.878 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.042 0.958 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.844 -5.546 -0.451 5.862 hybrid contribution 0.450 2.209 0.693 2.359 sum 2.294 -3.337 0.242 4.056 Atomic orbital electron populations 1.70027 1.05338 1.25820 1.52365 1.25143 0.95197 0.98563 1.00183 0.86303 0.79770 0.83833 0.77427 1.19989 1.21399 1.21544 1.19144 0.93274 0.84577 1.41642 0.91175 1.43947 1.42856 1.02543 1.41586 1.20932 0.89716 1.00591 0.85163 1.24166 1.03713 0.93191 1.03260 1.86187 1.58985 1.16284 1.47048 1.23944 0.98839 1.03045 0.97653 1.20472 0.95052 0.87911 0.89906 0.93916 1.21403 0.99065 0.98501 0.94616 1.22658 0.89158 1.02427 0.86842 1.86359 1.42064 1.76583 1.34274 0.93387 0.87829 0.94942 0.90690 0.89420 0.89256 0.90420 0.93064 0.90909 0.88201 0.95778 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 11.34 55.49 0.63 -23.27 16 2 C 0.01 0.23 4.70 -17.43 -0.08 0.15 16 3 Si 0.90 20.54 29.59 -169.99 -5.03 15.51 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.26 -6.40 6.00 -15.06 -0.09 -6.49 16 8 H 0.07 1.78 6.10 -52.49 -0.32 1.46 16 9 N -0.59 -13.61 2.75 -165.57 -0.46 -14.07 16 10 C 0.16 3.70 5.40 -3.98 -0.02 3.68 16 11 C -0.09 -1.81 6.67 37.28 0.25 -1.56 16 12 S -0.31 -5.89 22.29 -107.50 -2.40 -8.28 16 13 C -0.08 -1.54 5.95 37.28 0.22 -1.32 16 14 C 0.18 3.57 2.72 -67.88 -0.18 3.38 16 15 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.10 -1.88 4.57 -26.73 -0.12 -2.00 16 17 C 0.07 1.32 6.72 37.16 0.25 1.57 16 18 O -0.59 -10.85 13.66 -35.23 -0.48 -11.33 16 19 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 20 H 0.10 2.59 5.75 -51.93 -0.30 2.29 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 23 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 24 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 25 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.51 6.57 -51.93 -0.34 1.17 16 28 H 0.10 2.33 5.31 -51.93 -0.28 2.05 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.37 5.14 9.12 45.56 0.42 5.55 16 LS Contribution 249.98 15.07 3.77 3.77 Total: -1.00 -27.17 249.98 -7.08 -34.25 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.34 Total: 6.01 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 0.22 Total: -2.59 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.17 Total: -37.34 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.48 Total: -11.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -2.40 Total: -8.28 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.17 -7.08 -34.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.768 kcal (2) G-P(sol) polarization free energy of solvation -27.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds