Wall clock time and date at job start Mon Mar 30 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 109.47076 * 2 1 4 4 C 1.81399 * 102.99963 * 243.60914 * 2 1 3 5 5 C 1.53002 * 112.85220 * 311.53136 * 4 2 1 6 6 N 1.46499 * 109.46874 * 294.60853 * 5 4 2 7 7 C 1.36935 * 120.00057 * 185.09357 * 6 5 4 8 8 H 1.08003 * 119.99688 * 353.72613 * 7 6 5 9 9 C 1.38813 * 120.00377 * 173.72855 * 7 6 5 10 10 N 1.31618 * 120.00005 * 182.21228 * 9 7 6 11 11 Si 1.86801 * 119.99808 * 2.21888 * 9 7 6 12 12 H 1.48499 * 109.47102 * 90.74707 * 11 9 7 13 13 H 1.48501 * 109.47081 * 210.74904 * 11 9 7 14 14 H 1.48498 * 109.47015 * 330.74848 * 11 9 7 15 15 C 1.53779 * 113.61495 * 180.33393 * 4 2 1 16 16 C 1.53787 * 87.17080 * 270.76002 * 15 4 2 17 17 C 1.53785 * 113.68842 * 82.79685 * 4 2 1 18 18 H 1.09001 * 109.46956 * 181.86837 * 1 2 3 19 19 H 1.08997 * 109.47285 * 301.86591 * 1 2 3 20 20 H 1.09001 * 109.46711 * 61.86503 * 1 2 3 21 21 H 1.08997 * 109.46799 * 54.60841 * 5 4 2 22 22 H 1.08998 * 109.46850 * 174.61236 * 5 4 2 23 23 H 0.97003 * 120.00288 * 5.08971 * 6 5 4 24 24 H 0.96997 * 119.99718 * 179.97438 * 10 9 7 25 25 H 1.09005 * 113.61592 * 25.34527 * 15 4 2 26 26 H 1.08998 * 113.61790 * 156.16916 * 15 4 2 27 27 H 1.09004 * 113.61346 * 89.16153 * 16 15 4 28 28 H 1.09009 * 113.61198 * 220.05855 * 16 15 4 29 29 H 1.09002 * 113.61460 * 203.67307 * 17 4 2 30 30 H 1.08992 * 113.61494 * 334.50001 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 1.4449 -2.0819 -1.8211 6 7 1.8493 -3.0825 -0.8304 7 6 1.3625 -4.3599 -0.9094 8 1 0.6042 -4.6047 -1.6385 9 6 1.8435 -5.3403 -0.0524 10 7 1.4074 -6.5777 -0.1572 11 14 3.1096 -4.9033 1.2496 12 1 2.4161 -4.5189 2.5052 13 1 3.9820 -6.0775 1.5055 14 1 3.9373 -3.7661 0.7732 15 6 3.7336 -0.9189 -1.8334 16 6 3.6714 0.4732 -2.4840 17 6 2.1890 0.1807 -2.7792 18 1 -0.3633 -1.0271 0.0335 19 1 -0.3634 0.5425 0.8727 20 1 -0.3633 0.4846 -0.9063 21 1 0.3766 -1.8876 -1.7261 22 1 1.6588 -2.4552 -2.8226 23 1 2.4620 -2.8401 -0.1185 24 1 1.7438 -7.2628 0.4414 25 1 4.3266 -0.9475 -0.9192 26 1 3.9922 -1.7156 -2.5308 27 1 3.8233 1.2914 -1.7799 28 1 4.2862 0.5645 -3.3795 29 1 2.0253 -0.3146 -3.7363 30 1 1.5341 1.0389 -2.6291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393689881.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:41 Heat of formation + Delta-G solvation = 0.294667 kcal Electronic energy + Delta-G solvation = -13309.007515 eV Core-core repulsion = 11039.452430 eV Total energy + Delta-G solvation = -2269.555085 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.78272 -35.57099 -34.32824 -31.36775 -28.95402 -27.39269 -25.54789 -23.39856 -21.46275 -19.90039 -17.82494 -16.86099 -15.92630 -15.01475 -14.66033 -14.35710 -13.79562 -13.69902 -13.49581 -12.66104 -12.46773 -12.33271 -12.23813 -11.99982 -11.49843 -11.20373 -11.13384 -10.86507 -10.25747 -10.21838 -10.01377 -9.61998 -9.60621 -8.89169 -7.95683 -7.26226 -5.79160 -3.16476 1.75636 2.81350 3.37272 3.39054 3.46268 3.96880 4.53533 4.57912 4.75300 4.94619 5.06695 5.29395 5.50346 5.50586 5.62448 5.78801 5.80830 5.89729 5.97634 6.05817 6.13194 6.22330 6.49798 6.54251 6.60924 7.97189 8.39248 9.18004 9.89567 10.09712 11.38855 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.010246 C = 0.009863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.057644 B = 2732.102526 C = 2838.134785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.479 4.479 2 S 1.253 4.747 3 O -0.861 6.861 4 C -0.410 4.410 5 C 0.195 3.805 6 N -0.752 5.752 7 C -0.247 4.247 8 H 0.090 0.910 9 C 0.008 3.992 10 N -0.932 5.932 11 Si 0.874 3.126 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.271 1.271 15 C -0.086 4.086 16 C -0.155 4.155 17 C -0.110 4.110 18 H 0.125 0.875 19 H 0.099 0.901 20 H 0.078 0.922 21 H 0.029 0.971 22 H 0.037 0.963 23 H 0.362 0.638 24 H 0.260 0.740 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 11.657 -0.455 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 1.451 4.549 3 O -0.856 6.856 4 C -0.509 4.509 5 C 0.067 3.933 6 N -0.398 5.398 7 C -0.377 4.377 8 H 0.108 0.892 9 C -0.188 4.188 10 N -0.580 5.580 11 Si 0.704 3.296 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.196 1.196 15 C -0.125 4.125 16 C -0.192 4.192 17 C -0.149 4.149 18 H 0.144 0.856 19 H 0.118 0.882 20 H 0.098 0.902 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.195 0.805 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.370 11.819 0.151 12.055 hybrid contribution -0.095 1.149 -0.857 1.437 sum 2.275 12.968 -0.706 13.185 Atomic orbital electron populations 1.27540 1.20754 1.09164 1.06299 1.70653 0.87185 0.97578 0.99436 1.92996 1.73788 1.37294 1.81510 1.29249 1.03620 1.05150 1.12835 1.20270 0.94800 0.84408 0.93805 1.42670 1.56774 1.08930 1.31437 1.19005 1.17715 0.83910 1.17063 0.89246 1.24690 0.99373 0.95049 0.99719 1.69706 1.47070 1.00673 1.40531 0.86689 0.82312 0.77775 0.82851 1.20495 1.21722 1.19625 1.22441 0.91540 0.97362 1.01165 1.23107 0.96350 0.98325 1.01419 1.22765 0.97411 0.97131 0.97595 0.85641 0.88220 0.90233 0.95365 0.94522 0.80511 0.93008 0.91364 0.88749 0.89029 0.91411 0.89609 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -6.30 9.84 101.05 0.99 -5.30 16 2 S 1.25 18.20 13.03 -107.50 -1.40 16.80 16 3 O -0.86 -15.81 16.29 -35.23 -0.57 -16.38 16 4 C -0.41 -6.24 0.81 -89.81 -0.07 -6.32 16 5 C 0.20 3.46 5.34 -4.04 -0.02 3.44 16 6 N -0.75 -15.99 5.16 -59.91 -0.31 -16.30 16 7 C -0.25 -6.50 10.47 -15.06 -0.16 -6.66 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 10 N -0.93 -28.09 13.97 55.49 0.78 -27.31 16 11 Si 0.87 20.34 27.75 -169.99 -4.72 15.62 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 H -0.27 -5.72 6.51 56.52 0.37 -5.36 16 15 C -0.09 -1.28 7.09 -25.92 -0.18 -1.46 16 16 C -0.15 -2.17 7.69 -25.82 -0.20 -2.37 16 17 C -0.11 -1.57 7.09 -25.83 -0.18 -1.75 16 18 H 0.13 1.65 7.33 -51.92 -0.38 1.27 16 19 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 20 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 21 H 0.03 0.49 6.62 -51.93 -0.34 0.15 16 22 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 23 H 0.36 7.28 5.30 -40.82 -0.22 7.06 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 27 H 0.09 1.42 6.85 -51.93 -0.36 1.06 16 28 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 258.07 15.07 3.89 3.89 Total: -1.00 -31.79 258.07 -6.51 -38.30 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.25 Total: 5.69 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 0.08 Total: -20.31 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.47 Total: -43.61 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.57 Total: -16.38 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.72 Total: 15.62 kcal Atomic # 16 Polarization: 18.20 SS G_CDS: -1.40 Total: 16.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.79 -6.51 -38.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393689881.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.591 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds