Wall clock time and date at job start Mon Mar 30 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 109.47076 * 2 1 4 4 C 1.81399 * 102.99963 * 243.60914 * 2 1 3 5 5 C 1.53002 * 112.85220 * 311.53136 * 4 2 1 6 6 N 1.46499 * 109.46874 * 294.60853 * 5 4 2 7 7 C 1.36935 * 120.00057 * 185.09357 * 6 5 4 8 8 H 1.08003 * 119.99688 * 353.72613 * 7 6 5 9 9 C 1.38813 * 120.00377 * 173.72855 * 7 6 5 10 10 N 1.31618 * 120.00005 * 182.21228 * 9 7 6 11 11 Si 1.86801 * 119.99808 * 2.21888 * 9 7 6 12 12 H 1.48499 * 109.47102 * 90.74707 * 11 9 7 13 13 H 1.48501 * 109.47081 * 210.74904 * 11 9 7 14 14 H 1.48498 * 109.47015 * 330.74848 * 11 9 7 15 15 C 1.53779 * 113.61495 * 180.33393 * 4 2 1 16 16 C 1.53787 * 87.17080 * 270.76002 * 15 4 2 17 17 C 1.53785 * 113.68842 * 82.79685 * 4 2 1 18 18 H 1.09001 * 109.46956 * 181.86837 * 1 2 3 19 19 H 1.08997 * 109.47285 * 301.86591 * 1 2 3 20 20 H 1.09001 * 109.46711 * 61.86503 * 1 2 3 21 21 H 1.08997 * 109.46799 * 54.60841 * 5 4 2 22 22 H 1.08998 * 109.46850 * 174.61236 * 5 4 2 23 23 H 0.97003 * 120.00288 * 5.08971 * 6 5 4 24 24 H 0.96997 * 119.99718 * 179.97438 * 10 9 7 25 25 H 1.09005 * 113.61592 * 25.34527 * 15 4 2 26 26 H 1.08998 * 113.61790 * 156.16916 * 15 4 2 27 27 H 1.09004 * 113.61346 * 89.16153 * 16 15 4 28 28 H 1.09009 * 113.61198 * 220.05855 * 16 15 4 29 29 H 1.09002 * 113.61460 * 203.67307 * 17 4 2 30 30 H 1.08992 * 113.61494 * 334.50001 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 1.4449 -2.0819 -1.8211 6 7 1.8493 -3.0825 -0.8304 7 6 1.3625 -4.3599 -0.9094 8 1 0.6042 -4.6047 -1.6385 9 6 1.8435 -5.3403 -0.0524 10 7 1.4074 -6.5777 -0.1572 11 14 3.1096 -4.9033 1.2496 12 1 2.4161 -4.5189 2.5052 13 1 3.9820 -6.0775 1.5055 14 1 3.9373 -3.7661 0.7732 15 6 3.7336 -0.9189 -1.8334 16 6 3.6714 0.4732 -2.4840 17 6 2.1890 0.1807 -2.7792 18 1 -0.3633 -1.0271 0.0335 19 1 -0.3634 0.5425 0.8727 20 1 -0.3633 0.4846 -0.9063 21 1 0.3766 -1.8876 -1.7261 22 1 1.6588 -2.4552 -2.8226 23 1 2.4620 -2.8401 -0.1185 24 1 1.7438 -7.2628 0.4414 25 1 4.3266 -0.9475 -0.9192 26 1 3.9922 -1.7156 -2.5308 27 1 3.8233 1.2914 -1.7799 28 1 4.2862 0.5645 -3.3795 29 1 2.0253 -0.3146 -3.7363 30 1 1.5341 1.0389 -2.6291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393689881.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:41 Heat of formation + Delta-G solvation = -22.357642 kcal Electronic energy + Delta-G solvation = -13309.989793 eV Core-core repulsion = 11039.452430 eV Total energy + Delta-G solvation = -2270.537363 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00196 -36.94064 -36.04736 -33.31761 -30.17651 -28.85690 -26.71099 -25.05447 -23.07288 -21.08335 -19.72901 -18.09823 -17.15583 -16.48531 -16.35349 -15.67589 -15.25192 -14.94072 -14.87121 -14.40280 -13.81686 -13.66274 -13.46060 -13.39126 -12.80964 -12.78565 -12.58070 -12.29305 -11.97355 -11.73062 -11.41640 -11.29410 -10.91325 -10.73055 -9.26562 -9.06816 -7.90287 -5.25284 0.59275 1.53845 1.57111 1.64258 1.66316 2.63045 2.76786 3.26101 3.44704 3.58758 3.79627 3.86107 4.07245 4.25017 4.44205 4.52967 4.65912 4.74985 4.82380 4.92590 4.97738 5.00874 5.18417 5.25323 5.37775 5.89482 6.31886 7.20742 7.93314 8.16420 9.30835 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.010246 C = 0.009863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.057644 B = 2732.102526 C = 2838.134785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 S 1.276 4.724 3 O -0.897 6.897 4 C -0.411 4.411 5 C 0.197 3.803 6 N -0.749 5.749 7 C -0.230 4.230 8 H 0.055 0.945 9 C -0.061 4.061 10 N -0.987 5.987 11 Si 0.935 3.065 12 H -0.264 1.264 13 H -0.305 1.305 14 H -0.234 1.234 15 C -0.091 4.091 16 C -0.148 4.148 17 C -0.109 4.109 18 H 0.127 0.873 19 H 0.116 0.884 20 H 0.080 0.920 21 H 0.038 0.962 22 H 0.029 0.971 23 H 0.371 0.629 24 H 0.256 0.744 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 13.272 0.040 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 1.476 4.524 3 O -0.892 6.892 4 C -0.509 4.509 5 C 0.070 3.930 6 N -0.395 5.395 7 C -0.361 4.361 8 H 0.073 0.927 9 C -0.252 4.252 10 N -0.637 5.637 11 Si 0.760 3.240 12 H -0.189 1.189 13 H -0.232 1.232 14 H -0.158 1.158 15 C -0.130 4.130 16 C -0.186 4.186 17 C -0.147 4.147 18 H 0.146 0.854 19 H 0.135 0.865 20 H 0.100 0.900 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.205 0.795 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.138 13.503 0.626 13.877 hybrid contribution -0.457 0.658 -1.111 1.370 sum 2.682 14.161 -0.485 14.421 Atomic orbital electron populations 1.27502 1.19232 1.09634 1.07303 1.70254 0.87753 0.96075 0.98317 1.92942 1.75302 1.38976 1.82030 1.29219 1.03810 1.03952 1.13935 1.20318 0.95611 0.84665 0.92443 1.42565 1.56638 1.07759 1.32557 1.18935 1.16107 0.85849 1.15213 0.92664 1.25513 1.02273 0.94784 1.02672 1.69900 1.49444 1.02184 1.42185 0.85701 0.79812 0.78164 0.80291 1.18876 1.23238 1.15764 1.22502 0.91071 0.97712 1.01689 1.23020 0.96401 0.97363 1.01780 1.22793 0.97659 0.96712 0.97564 0.85441 0.86520 0.90049 0.94467 0.95291 0.79464 0.93532 0.90487 0.88969 0.90325 0.89604 0.88625 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -11.28 9.84 113.37 1.12 -10.17 16 2 S 1.28 33.96 13.03 -56.49 -0.74 33.22 16 3 O -0.90 -31.14 16.29 -148.98 -2.43 -33.57 16 4 C -0.41 -11.54 0.81 -10.27 -0.01 -11.55 16 5 C 0.20 6.60 5.34 86.38 0.46 7.06 16 6 N -0.75 -30.40 5.16 -343.46 -1.77 -32.17 16 7 C -0.23 -12.04 10.47 84.03 0.88 -11.16 16 8 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 9 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 10 N -0.99 -60.67 13.97 21.65 0.30 -60.36 16 11 Si 0.93 40.73 27.75 68.60 1.90 42.63 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 13 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.23 -8.69 6.51 99.48 0.65 -8.04 16 15 C -0.09 -2.46 7.09 31.12 0.22 -2.24 16 16 C -0.15 -3.80 7.69 31.18 0.24 -3.56 16 17 C -0.11 -2.84 7.09 31.18 0.22 -2.62 16 18 H 0.13 3.02 7.33 -2.39 -0.02 3.00 16 19 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.04 1.21 6.62 -2.39 -0.02 1.19 16 22 H 0.03 1.04 8.07 -2.39 -0.02 1.02 16 23 H 0.37 13.80 5.30 -92.71 -0.49 13.30 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.08 1.94 8.10 -2.38 -0.02 1.92 16 26 H 0.09 2.54 8.10 -2.39 -0.02 2.52 16 27 H 0.08 2.27 6.85 -2.38 -0.02 2.26 16 28 H 0.09 1.88 8.14 -2.38 -0.02 1.87 16 29 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 30 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -67.64 258.07 1.44 -66.20 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.57 Total: 21.18 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.60 Total: -37.14 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -1.47 Total: -92.53 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -2.43 Total: -33.57 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.90 Total: 42.63 kcal Atomic # 16 Polarization: 33.96 SS G_CDS: -0.74 Total: 33.22 kcal Total: -67.64 1.44 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393689881.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.843 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds