Wall clock time and date at job start Mon Mar 30 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47333 * 2 1 4 4 C 1.38500 * 119.36161 * 89.99732 * 3 2 1 5 5 C 1.38725 * 121.22152 * 179.97438 * 4 3 2 6 6 O 1.35692 * 120.04833 * 179.97438 * 5 4 3 7 7 C 1.40006 * 119.90423 * 0.02562 * 5 4 3 8 8 C 1.43200 * 120.61188 * 180.02562 * 7 5 4 9 9 N 6.87803 * 109.49138 * 1.00273 * 2 1 3 10 10 C 1.46512 * 118.78344 * 359.97438 * 7 5 4 11 11 C 1.40788 * 120.58712 * 180.02562 * 10 7 5 12 12 H 1.08004 * 119.99313 * 335.88341 * 11 10 7 13 13 C 1.40243 * 120.00135 * 155.88462 * 11 10 7 14 14 N 1.30649 * 120.00005 * 341.77779 * 13 11 10 15 15 Si 1.86798 * 119.99916 * 161.78630 * 13 11 10 16 16 H 1.48496 * 109.47611 * 89.99237 * 15 13 11 17 17 H 1.48499 * 109.47071 * 209.99976 * 15 13 11 18 18 H 1.48498 * 109.46940 * 329.99315 * 15 13 11 19 19 C 1.37543 * 119.35648 * 269.98216 * 3 2 1 20 20 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47183 * 300.00274 * 1 2 3 22 22 H 1.08993 * 109.47272 * 59.99861 * 1 2 3 23 23 H 1.08997 * 109.46768 * 239.99747 * 2 1 3 24 24 H 1.09004 * 109.46715 * 119.99701 * 2 1 3 25 25 H 1.07997 * 119.39122 * 359.69913 * 4 3 2 26 26 H 0.96703 * 114.00414 * 90.00255 * 6 5 4 27 27 H 0.97001 * 120.00138 * 185.04910 * 14 13 11 28 28 H 1.07997 * 120.01165 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2587 2.0610 1.2071 5 6 2.7215 3.3681 1.2521 6 8 2.9346 3.9726 2.4481 7 6 2.9672 4.0629 0.0617 8 6 3.4455 5.4124 0.0905 9 7 3.8250 6.4829 0.1135 10 6 2.7271 3.3837 -1.2140 11 6 2.9621 4.0464 -2.4338 12 1 2.9386 5.1254 -2.4753 13 6 3.2265 3.3055 -3.5948 14 7 3.6058 2.0587 -3.5018 15 14 3.0367 4.1013 -5.2741 16 1 4.3243 4.7224 -5.6760 17 1 2.6525 3.0692 -6.2703 18 1 1.9822 5.1449 -5.2109 19 6 2.2575 2.0564 -1.1988 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.0673 1.5345 2.1304 26 1 3.8291 3.8530 2.7954 27 1 3.8592 1.5681 -4.2993 28 1 2.0748 1.5374 -2.1281 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575643916.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:47 Heat of formation + Delta-G solvation = -35.629983 kcal Electronic energy + Delta-G solvation = -13795.714596 eV Core-core repulsion = 11389.157750 eV Total energy + Delta-G solvation = -2406.556846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21366 -37.84577 -37.11599 -35.95162 -33.89447 -31.09456 -29.89248 -27.56825 -24.99788 -23.01382 -22.04757 -19.82234 -18.81532 -18.05436 -17.22677 -16.37332 -15.84757 -15.29830 -14.81905 -14.56664 -14.38531 -14.24439 -13.58302 -13.54730 -13.44593 -13.33736 -12.87566 -12.55793 -12.36791 -12.11206 -11.98047 -11.66417 -11.56009 -11.13571 -11.07106 -9.40233 -9.14504 -8.83576 -6.57180 0.32714 0.90909 1.35874 1.45080 1.51289 2.03789 2.12433 2.34832 2.61067 3.36097 3.60669 3.67549 4.24660 4.39582 4.70309 4.77081 4.89402 4.93081 5.05977 5.10838 5.20743 5.28801 5.44893 5.52704 5.74566 5.85168 6.05577 6.11827 6.41981 6.60820 6.72778 6.93922 7.08728 8.06341 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.012797 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.690551 B = 2187.429271 C = 3348.818866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.024 4.024 4 C -0.262 4.262 5 C 0.186 3.814 6 O -0.513 6.513 7 C -0.245 4.245 8 C 0.309 3.691 9 N -0.532 5.532 10 C 0.140 3.860 11 C -0.464 4.464 12 H 0.068 0.932 13 C 0.047 3.953 14 N -0.778 5.778 15 Si 0.977 3.023 16 H -0.263 1.263 17 H -0.250 1.250 18 H -0.264 1.264 19 C -0.189 4.189 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.402 0.598 27 H 0.303 0.697 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -7.699 0.949 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.025 4.025 4 C -0.281 4.281 5 C 0.140 3.860 6 O -0.325 6.325 7 C -0.252 4.252 8 C 0.001 3.999 9 N -0.212 5.212 10 C 0.135 3.865 11 C -0.492 4.492 12 H 0.086 0.914 13 C -0.174 4.174 14 N -0.401 5.401 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.173 1.173 18 H -0.188 1.188 19 C -0.208 4.208 20 H 0.095 0.905 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.147 0.853 26 H 0.260 0.740 27 H 0.114 0.886 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.800 -6.122 0.802 6.780 hybrid contribution 0.573 0.166 -0.612 0.854 sum -2.228 -5.956 0.191 6.362 Atomic orbital electron populations 1.21680 0.94095 1.02224 1.01573 1.20568 0.96685 0.91645 1.02803 1.19795 0.94445 0.96209 0.92092 1.20527 1.15665 0.93968 0.97983 1.18165 0.95458 0.90279 0.82131 1.84611 1.37374 1.76509 1.34056 1.17571 1.23658 0.89174 0.94767 1.25834 0.90920 0.92600 0.90564 1.80956 1.16161 1.13337 1.10779 1.18608 0.86291 0.92074 0.89563 1.19849 1.41180 0.94806 0.93318 0.91420 1.26745 0.91175 0.94831 1.04693 1.69681 1.25822 1.10088 1.34461 0.85250 0.79898 0.79453 0.75684 1.18821 1.17310 1.18757 1.21127 1.06983 0.95312 0.97377 0.90547 0.92747 0.93867 0.91471 0.89938 0.85259 0.73970 0.88577 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.90 71.98 0.71 -2.92 15 2 C -0.08 -2.39 6.03 29.85 0.18 -2.22 15 3 C -0.02 -0.95 5.12 -19.97 -0.10 -1.05 15 4 C -0.26 -10.09 9.55 22.45 0.21 -9.88 15 5 C 0.19 7.92 6.71 22.82 0.15 8.07 15 6 O -0.51 -19.14 12.94 -90.12 -1.17 -20.31 15 7 C -0.24 -11.92 5.96 -19.45 -0.12 -12.04 15 8 C 0.31 15.60 13.85 88.33 1.22 16.83 15 9 N -0.53 -27.30 18.54 19.00 0.35 -26.95 15 10 C 0.14 7.06 5.74 -19.87 -0.11 6.94 15 11 C -0.46 -23.75 8.58 23.38 0.20 -23.55 15 12 H 0.07 3.59 7.38 -2.91 -0.02 3.57 15 13 C 0.05 2.16 5.14 85.36 0.44 2.60 15 14 N -0.78 -35.26 10.96 21.88 0.24 -35.02 15 15 Si 0.98 35.18 29.60 68.60 2.03 37.21 15 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 17 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 18 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 19 C -0.19 -8.64 8.32 22.73 0.19 -8.46 15 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 23 H 0.07 2.02 8.07 -2.39 -0.02 2.00 15 24 H 0.08 2.12 8.07 -2.38 -0.02 2.11 15 25 H 0.13 4.25 8.06 -2.91 -0.02 4.23 15 26 H 0.40 11.03 9.06 -74.05 -0.67 10.36 15 27 H 0.30 12.04 8.30 -92.71 -0.77 11.27 15 28 H 0.12 5.60 6.17 -2.91 -0.02 5.59 15 Total: -1.00 -57.55 257.78 4.96 -52.59 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.52 Total: 18.14 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 2.98 Total: -25.66 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.59 Total: -61.97 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.17 Total: -20.31 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -57.55 4.96 -52.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575643916.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.964 kcal (2) G-P(sol) polarization free energy of solvation -57.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds