Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35657 * 117.00045 * 2 1 4 4 C 1.37997 * 120.18735 * 359.97438 * 3 2 1 5 5 C 1.39865 * 119.89913 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.85632 * 180.02562 * 5 4 3 7 7 N 5.83610 * 81.28995 * 359.97438 * 2 1 3 8 8 C 1.40303 * 120.27846 * 359.97438 * 5 4 3 9 9 C 1.36035 * 120.38035 * 0.04190 * 8 5 4 10 10 C 1.50703 * 119.95303 * 179.97438 * 9 8 5 11 11 C 1.40969 * 120.09421 * 0.22854 * 9 8 5 12 12 C 1.40742 * 120.13959 * 179.71948 * 11 9 8 13 13 H 1.08002 * 119.99616 * 38.96053 * 12 11 9 14 14 C 1.40202 * 120.00192 * 218.95835 * 12 11 9 15 15 N 1.30698 * 119.99991 * 19.92915 * 14 12 11 16 16 Si 1.86798 * 120.00077 * 199.92908 * 14 12 11 17 17 H 1.48503 * 109.47031 * 89.99954 * 16 14 12 18 18 H 1.48496 * 109.47475 * 209.99801 * 16 14 12 19 19 H 1.48499 * 109.47057 * 330.00266 * 16 14 12 20 20 H 1.09007 * 109.47108 * 60.00043 * 1 2 3 21 21 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47120 * 300.00254 * 1 2 3 23 23 H 1.07995 * 120.04864 * 0.02796 * 4 3 2 24 24 H 1.07993 * 119.81260 * 180.02562 * 8 5 4 25 25 H 1.09008 * 109.46800 * 90.00059 * 10 9 8 26 26 H 1.09000 * 109.47245 * 329.99847 * 10 9 8 27 27 H 1.09001 * 109.47289 * 209.99811 * 10 9 8 28 28 H 0.97003 * 120.00065 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2971 2.3685 -0.0005 5 6 1.9383 3.6115 -0.0011 6 6 1.1615 4.8144 -0.0011 7 7 0.5452 5.7688 -0.0026 8 6 3.3395 3.6847 -0.0005 9 6 4.0877 2.5486 -0.0003 10 6 5.5921 2.6384 -0.0003 11 6 3.4579 1.2874 -0.0055 12 6 4.2312 0.1114 -0.0113 13 1 5.1359 0.0572 0.5760 14 6 3.8269 -0.9896 -0.7794 15 7 2.9888 -0.8241 -1.7685 16 14 4.4862 -2.6932 -0.3891 17 1 3.5879 -3.3599 0.5876 18 1 4.5466 -3.4982 -1.6354 19 1 5.8481 -2.5760 0.1911 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2184 2.3164 -0.0005 24 1 3.8268 4.6484 -0.0005 25 1 5.9547 2.6602 1.0274 26 1 5.9017 3.5484 -0.5143 27 1 6.0078 1.7716 -0.5140 28 1 2.7088 -1.5859 -2.2996 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645222.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = 2.254337 kcal Electronic energy + Delta-G solvation = -14079.481554 eV Core-core repulsion = 11674.567495 eV Total energy + Delta-G solvation = -2404.914059 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88451 -36.58843 -35.44817 -33.72294 -31.38836 -29.68583 -26.54885 -26.34374 -25.17177 -21.92915 -20.09851 -17.59901 -17.46947 -15.68715 -15.24502 -14.81666 -14.52009 -14.16650 -13.01600 -12.96556 -12.61681 -12.51847 -12.40674 -12.11793 -11.67438 -11.37807 -11.27968 -11.11221 -10.83713 -10.74027 -10.58097 -10.19203 -9.73098 -9.63652 -9.14237 -7.53994 -7.05764 -6.87359 -4.48911 2.08752 2.80738 2.99110 3.05344 3.06344 3.61485 3.85114 3.97377 4.54192 4.64975 5.13920 5.31456 5.82232 5.89378 5.94329 6.09441 6.15489 6.32212 6.54097 6.57905 6.70269 6.83757 6.96532 7.07477 7.45139 7.49038 7.71151 7.87574 8.24630 8.31563 8.50641 8.64590 8.95222 10.03590 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.010994 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.105797 B = 2546.249755 C = 3239.761196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.280 6.280 3 C 0.068 3.932 4 C -0.144 4.144 5 C -0.154 4.154 6 C 0.289 3.711 7 N -0.506 5.506 8 C -0.054 4.054 9 C -0.175 4.175 10 C -0.084 4.084 11 C 0.125 3.875 12 C -0.440 4.440 13 H 0.089 0.911 14 C 0.087 3.913 15 N -0.747 5.747 16 Si 0.907 3.093 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.262 1.262 20 H 0.041 0.959 21 H 0.079 0.921 22 H 0.036 0.964 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -3.376 1.536 3.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.193 6.193 3 C 0.022 3.978 4 C -0.166 4.166 5 C -0.160 4.160 6 C -0.021 4.021 7 N -0.185 5.185 8 C -0.075 4.075 9 C -0.177 4.177 10 C -0.141 4.141 11 C 0.121 3.879 12 C -0.467 4.467 13 H 0.107 0.893 14 C -0.137 4.137 15 N -0.369 5.369 16 Si 0.731 3.269 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.186 1.186 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.055 0.945 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.173 -2.212 1.319 2.581 hybrid contribution -0.038 -1.020 0.005 1.021 sum 0.135 -3.233 1.324 3.496 Atomic orbital electron populations 1.22748 0.82435 1.01664 0.99691 1.86185 1.17361 1.26845 1.88861 1.18971 0.92094 0.82627 1.04067 1.20551 0.97687 0.91315 1.07043 1.15110 0.91090 0.85823 1.23962 1.26148 0.92182 0.92643 0.91149 1.81069 1.10330 1.11793 1.15295 1.20070 0.91156 0.97137 0.99113 1.19148 0.94843 0.91641 1.12092 1.20407 0.92491 1.01058 1.00126 1.16967 0.88333 0.92670 0.89935 1.19460 1.08228 0.96021 1.23012 0.89319 1.25818 0.93626 1.00902 0.93352 1.69644 1.22586 1.33704 1.10989 0.86322 0.80281 0.81342 0.78948 1.19101 1.20400 1.18560 0.94084 0.90271 0.94511 0.87912 0.88320 0.93568 0.93889 0.91464 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 15 2 O -0.28 -6.30 7.40 -18.67 -0.14 -6.44 15 3 C 0.07 1.59 6.16 -38.42 -0.24 1.35 15 4 C -0.14 -3.15 8.73 -39.06 -0.34 -3.49 15 5 C -0.15 -3.32 5.76 -106.59 -0.61 -3.93 15 6 C 0.29 6.19 15.31 -22.47 -0.34 5.84 15 7 N -0.51 -11.18 18.54 41.84 0.78 -10.41 15 8 C -0.05 -1.12 9.30 -39.60 -0.37 -1.49 15 9 C -0.18 -3.80 5.89 -104.38 -0.62 -4.42 15 10 C -0.08 -1.54 9.45 36.01 0.34 -1.20 15 11 C 0.13 2.98 5.36 -106.66 -0.57 2.41 15 12 C -0.44 -10.36 7.57 -37.90 -0.29 -10.65 15 13 H 0.09 1.99 7.47 -52.49 -0.39 1.60 15 14 C 0.09 1.98 4.40 -17.30 -0.08 1.90 15 15 N -0.75 -17.76 11.25 55.56 0.62 -17.14 15 16 Si 0.91 17.31 29.61 -169.99 -5.03 12.28 15 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 18 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 19 H -0.26 -4.90 7.11 56.52 0.40 -4.49 15 20 H 0.04 0.70 7.66 -51.93 -0.40 0.30 15 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.04 0.59 7.66 -51.93 -0.40 0.19 15 23 H 0.10 2.05 6.29 -52.49 -0.33 1.72 15 24 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 25 H 0.05 0.78 8.14 -51.92 -0.42 0.35 15 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 15 27 H 0.07 1.27 6.97 -51.93 -0.36 0.90 15 28 H 0.28 6.20 8.29 -40.82 -0.34 5.87 15 LS Contribution 252.63 15.07 3.81 3.81 Total: -1.00 -25.92 252.63 -4.79 -30.70 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -2.70 Total: -0.66 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.12 Total: -12.14 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 1.40 Total: -27.54 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.14 Total: -6.44 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.92 -4.79 -30.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645222.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.957 kcal (2) G-P(sol) polarization free energy of solvation -25.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds