Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35657 * 117.00045 * 2 1 4 4 C 1.37997 * 120.18735 * 359.97438 * 3 2 1 5 5 C 1.39865 * 119.89913 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.85632 * 180.02562 * 5 4 3 7 7 N 5.83610 * 81.28995 * 359.97438 * 2 1 3 8 8 C 1.40303 * 120.27846 * 359.97438 * 5 4 3 9 9 C 1.36035 * 120.38035 * 0.04190 * 8 5 4 10 10 C 1.50703 * 119.95303 * 179.97438 * 9 8 5 11 11 C 1.40969 * 120.09421 * 0.22854 * 9 8 5 12 12 C 1.40742 * 120.13959 * 179.71948 * 11 9 8 13 13 H 1.08002 * 119.99616 * 38.96053 * 12 11 9 14 14 C 1.40202 * 120.00192 * 218.95835 * 12 11 9 15 15 N 1.30698 * 119.99991 * 19.92915 * 14 12 11 16 16 Si 1.86798 * 120.00077 * 199.92908 * 14 12 11 17 17 H 1.48503 * 109.47031 * 89.99954 * 16 14 12 18 18 H 1.48496 * 109.47475 * 209.99801 * 16 14 12 19 19 H 1.48499 * 109.47057 * 330.00266 * 16 14 12 20 20 H 1.09007 * 109.47108 * 60.00043 * 1 2 3 21 21 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47120 * 300.00254 * 1 2 3 23 23 H 1.07995 * 120.04864 * 0.02796 * 4 3 2 24 24 H 1.07993 * 119.81260 * 180.02562 * 8 5 4 25 25 H 1.09008 * 109.46800 * 90.00059 * 10 9 8 26 26 H 1.09000 * 109.47245 * 329.99847 * 10 9 8 27 27 H 1.09001 * 109.47289 * 209.99811 * 10 9 8 28 28 H 0.97003 * 120.00065 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2971 2.3685 -0.0005 5 6 1.9383 3.6115 -0.0011 6 6 1.1615 4.8144 -0.0011 7 7 0.5452 5.7688 -0.0026 8 6 3.3395 3.6847 -0.0005 9 6 4.0877 2.5486 -0.0003 10 6 5.5921 2.6384 -0.0003 11 6 3.4579 1.2874 -0.0055 12 6 4.2312 0.1114 -0.0113 13 1 5.1359 0.0572 0.5760 14 6 3.8269 -0.9896 -0.7794 15 7 2.9888 -0.8241 -1.7685 16 14 4.4862 -2.6932 -0.3891 17 1 3.5879 -3.3599 0.5876 18 1 4.5466 -3.4982 -1.6354 19 1 5.8481 -2.5760 0.1911 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2184 2.3164 -0.0005 24 1 3.8268 4.6484 -0.0005 25 1 5.9547 2.6602 1.0274 26 1 5.9017 3.5484 -0.5143 27 1 6.0078 1.7716 -0.5140 28 1 2.7088 -1.5859 -2.2996 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645222.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = -10.578402 kcal Electronic energy + Delta-G solvation = -14080.038023 eV Core-core repulsion = 11674.567495 eV Total energy + Delta-G solvation = -2405.470528 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53827 -38.23781 -37.15524 -35.41730 -33.03156 -31.34492 -28.04840 -27.98931 -26.77243 -23.63177 -21.73439 -19.30882 -19.11868 -17.35218 -16.87060 -16.46133 -16.07775 -15.77398 -14.66834 -14.53188 -14.20805 -14.17290 -13.96886 -13.78662 -13.29286 -12.96867 -12.83760 -12.65225 -12.39776 -12.26202 -12.09687 -11.78985 -11.33430 -11.27650 -10.82159 -9.23149 -8.74170 -8.55378 -6.23384 0.37027 1.12812 1.47070 1.52124 1.58773 1.89182 2.23186 2.31905 2.93441 3.02786 3.42096 3.61512 4.27875 4.47959 4.52345 4.54521 4.78194 4.83452 4.93189 5.10462 5.15583 5.23114 5.28887 5.51577 5.78275 5.81964 6.02251 6.21568 6.53255 6.64649 6.79096 6.93029 7.30072 8.38231 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.010994 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.105797 B = 2546.249755 C = 3239.761196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.300 3.700 7 N -0.516 5.516 8 C -0.057 4.057 9 C -0.183 4.183 10 C -0.080 4.080 11 C 0.095 3.905 12 C -0.464 4.464 13 H 0.091 0.909 14 C 0.054 3.946 15 N -0.780 5.780 16 Si 0.968 3.032 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.256 1.256 20 H 0.041 0.959 21 H 0.102 0.898 22 H 0.050 0.950 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -3.466 1.836 4.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.005 3.995 4 C -0.170 4.170 5 C -0.163 4.163 6 C -0.010 4.010 7 N -0.195 5.195 8 C -0.078 4.078 9 C -0.185 4.185 10 C -0.137 4.137 11 C 0.091 3.909 12 C -0.491 4.491 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.402 5.402 16 Si 0.790 3.210 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.179 1.179 20 H 0.060 0.940 21 H 0.120 0.880 22 H 0.068 0.932 23 H 0.135 0.865 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.507 -2.289 1.621 2.850 hybrid contribution -0.203 -0.911 -0.078 0.937 sum 0.304 -3.201 1.542 3.566 Atomic orbital electron populations 1.22988 0.80299 1.03485 1.00293 1.86133 1.19691 1.26791 1.88906 1.19173 0.92413 0.83312 1.04565 1.20716 0.98456 0.91110 1.06753 1.15265 0.91613 0.85726 1.23687 1.26043 0.91840 0.92371 0.90771 1.81083 1.10642 1.12127 1.15646 1.20323 0.90928 0.98048 0.98484 1.19573 0.96650 0.91214 1.11086 1.20415 0.90323 1.01681 1.01275 1.17423 0.89086 0.93769 0.90653 1.19652 1.08746 0.96877 1.23824 0.89116 1.26473 0.93637 1.03747 0.92783 1.69688 1.23959 1.34718 1.11883 0.85393 0.79727 0.77224 0.78624 1.19460 1.19854 1.17908 0.94041 0.87965 0.93174 0.86545 0.85917 0.92025 0.91726 0.92433 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.97 15 2 O -0.30 -13.55 7.40 -89.72 -0.66 -14.21 15 3 C 0.05 2.39 6.16 23.02 0.14 2.53 15 4 C -0.15 -6.38 8.73 22.61 0.20 -6.18 15 5 C -0.16 -6.58 5.76 -21.14 -0.12 -6.70 15 6 C 0.30 12.35 15.31 88.33 1.35 13.70 15 7 N -0.52 -21.94 18.54 19.00 0.35 -21.59 15 8 C -0.06 -2.29 9.30 22.26 0.21 -2.08 15 9 C -0.18 -7.77 5.89 -19.71 -0.12 -7.89 15 10 C -0.08 -2.82 9.45 71.24 0.67 -2.14 15 11 C 0.09 4.50 5.36 -21.19 -0.11 4.39 15 12 C -0.46 -21.86 7.57 23.36 0.18 -21.69 15 13 H 0.09 4.07 7.47 -2.91 -0.02 4.05 15 14 C 0.05 2.47 4.40 85.34 0.38 2.84 15 15 N -0.78 -37.18 11.25 21.87 0.25 -36.93 15 16 Si 0.97 35.12 29.61 68.60 2.03 37.15 15 17 H -0.27 -9.83 7.11 99.48 0.71 -9.13 15 18 H -0.27 -9.58 7.11 99.48 0.71 -8.88 15 19 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 20 H 0.04 1.39 7.66 -2.38 -0.02 1.37 15 21 H 0.10 2.94 8.14 -2.39 -0.02 2.92 15 22 H 0.05 1.55 7.66 -2.39 -0.02 1.53 15 23 H 0.12 4.54 6.29 -2.91 -0.02 4.52 15 24 H 0.12 4.26 8.06 -2.91 -0.02 4.23 15 25 H 0.06 1.95 8.14 -2.38 -0.02 1.93 15 26 H 0.06 1.95 8.08 -2.39 -0.02 1.93 15 27 H 0.06 2.12 6.97 -2.39 -0.02 2.10 15 28 H 0.29 12.62 8.29 -92.71 -0.77 11.85 15 Total: -1.00 -53.63 252.63 7.03 -46.60 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.18 Total: 10.23 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.89 Total: -21.25 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.60 Total: -58.52 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.66 Total: -14.21 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -53.63 7.03 -46.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645222.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -53.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds