Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47223 * 2 1 4 4 C 1.37860 * 119.94208 * 264.99712 * 3 2 1 5 5 C 1.39239 * 121.23013 * 179.97438 * 4 3 2 6 6 O 1.35788 * 119.46930 * 179.97438 * 5 4 3 7 7 C 1.38075 * 121.06494 * 0.02562 * 5 4 3 8 8 C 1.40624 * 119.79535 * 359.97438 * 7 5 4 9 9 C 1.40835 * 120.58325 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99811 * 150.14472 * 9 8 7 11 11 C 1.40219 * 120.00106 * 330.14470 * 9 8 7 12 12 N 1.30668 * 119.99934 * 161.88757 * 11 9 8 13 13 Si 1.86797 * 119.99835 * 341.88046 * 11 9 8 14 14 H 1.48508 * 109.46972 * 95.39279 * 13 11 9 15 15 H 1.48503 * 109.47220 * 215.38881 * 13 11 9 16 16 H 1.48492 * 109.47533 * 335.39696 * 13 11 9 17 17 C 1.39521 * 119.94654 * 84.97212 * 3 2 1 18 18 C 1.43199 * 120.52079 * 0.02562 * 17 3 2 19 19 N 3.56862 * 90.45273 * 73.98481 * 2 1 3 20 20 H 1.09003 * 109.46959 * 60.00288 * 1 2 3 21 21 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47606 * 300.00346 * 1 2 3 23 23 H 1.08993 * 109.47606 * 239.99654 * 2 1 3 24 24 H 1.09003 * 109.46959 * 119.99712 * 2 1 3 25 25 H 1.08000 * 119.38594 * 359.69709 * 4 3 2 26 26 H 0.96696 * 114.00376 * 90.00307 * 6 5 4 27 27 H 1.07998 * 120.10032 * 180.02562 * 7 5 4 28 28 H 0.97000 * 119.99820 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0349 -1.1900 5 6 2.8260 3.3465 -1.2213 6 8 3.1387 3.9162 -2.4136 7 6 2.9764 4.0771 -0.0593 8 6 2.6552 3.4938 1.1793 9 6 2.8017 4.2240 2.3747 10 1 2.1554 4.0190 3.2153 11 6 3.7868 5.2170 2.4734 12 7 3.7094 6.1230 3.4118 13 14 5.2097 5.2445 1.2635 14 1 4.8957 6.1770 0.1512 15 1 6.4411 5.6993 1.9578 16 1 5.4235 3.8795 0.7195 17 6 2.1646 2.1128 1.2043 18 6 1.8269 1.4835 2.4455 19 7 1.5581 0.9845 3.4300 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.2573 1.4868 -2.1150 26 1 2.3996 4.3742 -2.8366 27 1 3.3389 5.0935 -0.1017 28 1 4.3906 6.8102 3.4798 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = -17.577901 kcal Electronic energy + Delta-G solvation = -13920.062779 eV Core-core repulsion = 11514.288730 eV Total energy + Delta-G solvation = -2405.774049 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.80209 -36.65797 -34.88354 -34.51944 -32.70461 -29.94356 -28.62390 -25.80120 -23.55497 -21.78172 -20.50994 -17.97852 -17.39411 -16.97237 -15.50454 -14.91223 -14.47876 -13.83719 -13.45686 -13.23693 -12.84542 -12.79127 -12.19404 -12.09916 -11.92700 -11.50794 -11.45337 -11.15566 -11.08261 -10.77050 -10.44306 -10.15954 -10.08658 -9.71958 -9.29544 -7.89545 -7.59029 -7.31712 -4.87502 1.79634 2.39118 2.97523 3.05240 3.17763 3.74614 3.84382 3.85525 4.37894 4.83253 5.16717 5.23165 5.39481 5.48677 5.76845 5.95566 6.09189 6.15427 6.22247 6.37814 6.52852 6.54743 6.82202 6.86904 7.23058 7.35022 7.49331 7.55751 7.91638 8.14922 8.37317 8.43250 8.73588 9.66988 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.013093 C = 0.009316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.060011 B = 2138.028307 C = 3004.818214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C 0.029 3.971 4 C -0.274 4.274 5 C 0.168 3.832 6 O -0.512 6.512 7 C -0.265 4.265 8 C 0.137 3.863 9 C -0.414 4.414 10 H 0.098 0.902 11 C 0.083 3.917 12 N -0.774 5.774 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.238 1.238 17 C -0.174 4.174 18 C 0.300 3.700 19 N -0.498 5.498 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.382 0.618 27 H 0.115 0.885 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -2.573 -8.739 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C 0.026 3.974 4 C -0.294 4.294 5 C 0.124 3.876 6 O -0.322 6.322 7 C -0.284 4.284 8 C 0.131 3.869 9 C -0.440 4.440 10 H 0.116 0.884 11 C -0.141 4.141 12 N -0.395 5.395 13 Si 0.740 3.260 14 H -0.188 1.188 15 H -0.212 1.212 16 H -0.160 1.160 17 C -0.180 4.180 18 C -0.010 4.010 19 N -0.177 5.177 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.236 0.764 27 H 0.132 0.868 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.840 -3.347 -6.886 7.702 hybrid contribution 0.284 0.768 -0.848 1.179 sum -0.556 -2.579 -7.734 8.172 Atomic orbital electron populations 1.21686 0.94977 1.00969 1.02279 1.20576 0.96109 0.93740 1.02166 1.19203 0.93103 0.93606 0.91468 1.20183 1.16236 0.96288 0.96672 1.18297 0.94278 0.91137 0.83898 1.84710 1.39656 1.73629 1.34208 1.21195 1.15119 1.00299 0.91810 1.18254 0.87997 0.88347 0.92262 1.19657 1.13907 1.11236 0.99200 0.88360 1.26400 0.99808 0.92099 0.95804 1.69600 1.32292 1.08844 1.28760 0.86223 0.78383 0.82114 0.79303 1.18815 1.21177 1.16031 1.16736 1.21585 0.93985 0.85670 1.25549 0.91454 0.91596 0.92409 1.81039 1.14127 1.11442 1.11050 0.92440 0.93029 0.92642 0.91202 0.91618 0.87429 0.76366 0.86785 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 37.15 0.37 -1.70 15 2 C -0.09 -1.43 5.58 -27.88 -0.16 -1.59 15 3 C 0.03 0.57 5.16 -104.28 -0.54 0.03 15 4 C -0.27 -5.18 9.54 -39.35 -0.38 -5.55 15 5 C 0.17 3.36 6.67 -39.27 -0.26 3.10 15 6 O -0.51 -8.85 13.46 -19.08 -0.26 -9.11 15 7 C -0.26 -5.85 7.10 -38.74 -0.28 -6.13 15 8 C 0.14 3.26 5.27 -104.65 -0.55 2.71 15 9 C -0.41 -10.57 9.03 -37.86 -0.34 -10.91 15 10 H 0.10 2.72 7.66 -52.48 -0.40 2.31 15 11 C 0.08 2.03 5.41 -17.30 -0.09 1.94 15 12 N -0.77 -19.16 13.92 55.56 0.77 -18.39 15 13 Si 0.92 19.52 24.53 -169.99 -4.17 15.35 15 14 H -0.26 -5.39 6.72 56.52 0.38 -5.02 15 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 16 H -0.24 -5.28 6.86 56.52 0.39 -4.90 15 17 C -0.17 -3.90 5.95 -104.13 -0.62 -4.52 15 18 C 0.30 6.93 12.75 -22.47 -0.29 6.64 15 19 N -0.50 -11.86 18.54 41.84 0.78 -11.08 15 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.05 0.90 7.95 -51.93 -0.41 0.49 15 23 H 0.07 0.98 8.04 -51.93 -0.42 0.56 15 24 H 0.07 1.11 7.29 -51.93 -0.38 0.73 15 25 H 0.11 1.79 8.05 -52.49 -0.42 1.37 15 26 H 0.38 4.54 9.06 45.56 0.41 4.95 15 27 H 0.11 2.51 4.76 -52.49 -0.25 2.26 15 28 H 0.29 6.49 8.29 -40.82 -0.34 6.15 15 LS Contribution 250.86 15.07 3.78 3.78 Total: -1.00 -27.26 250.86 -4.11 -31.38 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -1.89 Total: 4.04 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.13 Total: -15.96 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 1.55 Total: -29.47 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.26 Total: -9.11 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.17 Total: 15.35 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.26 -4.11 -31.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.798 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds