Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47223 * 2 1 4 4 C 1.37860 * 119.94208 * 264.99712 * 3 2 1 5 5 C 1.39239 * 121.23013 * 179.97438 * 4 3 2 6 6 O 1.35788 * 119.46930 * 179.97438 * 5 4 3 7 7 C 1.38075 * 121.06494 * 0.02562 * 5 4 3 8 8 C 1.40624 * 119.79535 * 359.97438 * 7 5 4 9 9 C 1.40835 * 120.58325 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99811 * 150.14472 * 9 8 7 11 11 C 1.40219 * 120.00106 * 330.14470 * 9 8 7 12 12 N 1.30668 * 119.99934 * 161.88757 * 11 9 8 13 13 Si 1.86797 * 119.99835 * 341.88046 * 11 9 8 14 14 H 1.48508 * 109.46972 * 95.39279 * 13 11 9 15 15 H 1.48503 * 109.47220 * 215.38881 * 13 11 9 16 16 H 1.48492 * 109.47533 * 335.39696 * 13 11 9 17 17 C 1.39521 * 119.94654 * 84.97212 * 3 2 1 18 18 C 1.43199 * 120.52079 * 0.02562 * 17 3 2 19 19 N 3.56862 * 90.45273 * 73.98481 * 2 1 3 20 20 H 1.09003 * 109.46959 * 60.00288 * 1 2 3 21 21 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47606 * 300.00346 * 1 2 3 23 23 H 1.08993 * 109.47606 * 239.99654 * 2 1 3 24 24 H 1.09003 * 109.46959 * 119.99712 * 2 1 3 25 25 H 1.08000 * 119.38594 * 359.69709 * 4 3 2 26 26 H 0.96696 * 114.00376 * 90.00307 * 6 5 4 27 27 H 1.07998 * 120.10032 * 180.02562 * 7 5 4 28 28 H 0.97000 * 119.99820 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0349 -1.1900 5 6 2.8260 3.3465 -1.2213 6 8 3.1387 3.9162 -2.4136 7 6 2.9764 4.0771 -0.0593 8 6 2.6552 3.4938 1.1793 9 6 2.8017 4.2240 2.3747 10 1 2.1554 4.0190 3.2153 11 6 3.7868 5.2170 2.4734 12 7 3.7094 6.1230 3.4118 13 14 5.2097 5.2445 1.2635 14 1 4.8957 6.1770 0.1512 15 1 6.4411 5.6993 1.9578 16 1 5.4235 3.8795 0.7195 17 6 2.1646 2.1128 1.2043 18 6 1.8269 1.4835 2.4455 19 7 1.5581 0.9845 3.4300 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.2573 1.4868 -2.1150 26 1 2.3996 4.3742 -2.8366 27 1 3.3389 5.0935 -0.1017 28 1 4.3906 6.8102 3.4798 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = -35.680220 kcal Electronic energy + Delta-G solvation = -13920.847754 eV Core-core repulsion = 11514.288730 eV Total energy + Delta-G solvation = -2406.559025 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40363 -38.20524 -36.67400 -36.17630 -34.28824 -31.54010 -30.19474 -27.54920 -24.95839 -23.43804 -22.08906 -19.60484 -19.13009 -18.56131 -17.13180 -16.55955 -15.96900 -15.47892 -14.99344 -14.62106 -14.49768 -14.44813 -13.87196 -13.77046 -13.48685 -13.21361 -13.03766 -12.86700 -12.61256 -12.19751 -11.82902 -11.77687 -11.75167 -11.36737 -10.91222 -9.57786 -9.24714 -9.11369 -6.73841 0.11323 0.72621 1.26332 1.37221 1.47634 1.99284 2.03668 2.16681 2.55213 3.26014 3.49934 3.59535 3.94810 4.22324 4.49680 4.52937 4.64630 4.71704 4.84787 5.02035 5.08897 5.15427 5.26692 5.39288 5.58074 5.71026 5.81612 5.97646 6.05809 6.42244 6.53542 6.89099 7.08949 7.94818 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.013093 C = 0.009316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.060011 B = 2138.028307 C = 3004.818214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C 0.034 3.966 4 C -0.255 4.255 5 C 0.183 3.817 6 O -0.511 6.511 7 C -0.283 4.283 8 C 0.132 3.868 9 C -0.457 4.457 10 H 0.056 0.944 11 C 0.054 3.946 12 N -0.816 5.816 13 Si 0.966 3.034 14 H -0.246 1.246 15 H -0.272 1.272 16 H -0.251 1.251 17 C -0.195 4.195 18 C 0.305 3.695 19 N -0.521 5.521 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.104 0.896 24 H 0.054 0.946 25 H 0.146 0.854 26 H 0.410 0.590 27 H 0.113 0.887 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -3.715 -12.201 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C 0.031 3.969 4 C -0.274 4.274 5 C 0.138 3.862 6 O -0.325 6.325 7 C -0.303 4.303 8 C 0.126 3.874 9 C -0.484 4.484 10 H 0.074 0.926 11 C -0.166 4.166 12 N -0.440 5.440 13 Si 0.788 3.212 14 H -0.171 1.171 15 H -0.199 1.199 16 H -0.174 1.174 17 C -0.201 4.201 18 C -0.004 4.004 19 N -0.201 5.201 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.122 0.878 24 H 0.072 0.928 25 H 0.163 0.837 26 H 0.270 0.730 27 H 0.131 0.869 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.582 -4.475 -10.363 11.303 hybrid contribution 0.092 0.986 0.033 0.991 sum -0.490 -3.489 -10.330 10.914 Atomic orbital electron populations 1.21674 0.93699 1.02512 1.01709 1.20675 0.97111 0.91454 1.03287 1.19625 0.91728 0.95139 0.90432 1.20624 1.13314 0.95778 0.97709 1.18349 0.92243 0.91423 0.84217 1.84637 1.41317 1.73831 1.32694 1.21249 1.16324 1.00716 0.91993 1.18384 0.87868 0.88736 0.92375 1.19523 1.15677 1.14041 0.99184 0.92577 1.27008 1.01089 0.91394 0.97114 1.69615 1.33754 1.10004 1.30578 0.85470 0.76271 0.81477 0.78028 1.17109 1.19856 1.17442 1.17051 1.22496 0.94033 0.86524 1.25830 0.90925 0.91102 0.92528 1.81008 1.15115 1.12461 1.11489 0.90943 0.90527 0.95262 0.87799 0.92778 0.83651 0.73049 0.86907 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.89 71.98 0.71 -2.88 15 2 C -0.09 -2.53 5.58 29.85 0.17 -2.36 15 3 C 0.03 1.21 5.16 -19.64 -0.10 1.11 15 4 C -0.25 -8.42 9.54 22.42 0.21 -8.21 15 5 C 0.18 6.60 6.67 22.47 0.15 6.75 15 6 O -0.51 -15.11 13.46 -91.17 -1.23 -16.34 15 7 C -0.28 -12.11 7.10 22.81 0.16 -11.94 15 8 C 0.13 6.34 5.27 -19.88 -0.10 6.23 15 9 C -0.46 -24.58 9.03 23.39 0.21 -24.37 15 10 H 0.06 3.37 7.66 -2.91 -0.02 3.35 15 11 C 0.05 2.73 5.41 85.35 0.46 3.19 15 12 N -0.82 -42.20 13.92 21.87 0.30 -41.90 15 13 Si 0.97 40.12 24.53 68.60 1.68 41.81 15 14 H -0.25 -9.48 6.72 99.48 0.67 -8.81 15 15 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 16 H -0.25 -10.83 6.86 99.48 0.68 -10.15 15 17 C -0.20 -8.70 5.95 -19.55 -0.12 -8.81 15 18 C 0.31 14.44 12.75 88.33 1.13 15.57 15 19 N -0.52 -25.56 18.54 19.00 0.35 -25.21 15 20 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.03 0.89 7.95 -2.39 -0.02 0.87 15 23 H 0.10 2.32 8.04 -2.39 -0.02 2.30 15 24 H 0.05 1.70 7.29 -2.39 -0.02 1.68 15 25 H 0.15 3.81 8.05 -2.91 -0.02 3.79 15 26 H 0.41 7.56 9.06 -74.06 -0.67 6.88 15 27 H 0.11 4.80 4.76 -2.91 -0.01 4.79 15 28 H 0.30 13.85 8.29 -92.71 -0.77 13.08 15 Total: -1.00 -60.69 250.86 4.46 -56.23 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.46 Total: 11.12 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 2.88 Total: -25.72 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 0.66 Total: -67.11 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.23 Total: -16.34 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.68 Total: 41.81 kcal Total: -60.69 4.46 -56.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.552 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds