Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35692 * 116.99848 * 2 1 4 4 C 1.38777 * 119.42732 * 359.97438 * 3 2 1 5 5 C 1.39261 * 119.85339 * 179.75240 * 4 3 2 6 6 C 1.43206 * 120.59967 * 180.27864 * 5 4 3 7 7 N 5.84174 * 80.93251 * 0.14658 * 2 1 3 8 8 C 1.46604 * 118.80258 * 0.51900 * 5 4 3 9 9 C 1.40595 * 120.55509 * 179.73708 * 8 5 4 10 10 H 1.08001 * 119.99841 * 334.67485 * 9 8 5 11 11 C 1.40220 * 119.99913 * 154.94440 * 9 8 5 12 12 N 1.30688 * 120.00214 * 342.36784 * 11 9 8 13 13 Si 1.86795 * 119.99741 * 162.36413 * 11 9 8 14 14 H 1.48500 * 109.47166 * 90.00469 * 13 11 9 15 15 H 1.48506 * 109.47301 * 210.00239 * 13 11 9 16 16 H 1.48504 * 109.47330 * 330.00307 * 13 11 9 17 17 C 1.40933 * 118.89131 * 359.46841 * 8 5 4 18 18 C 1.36213 * 120.04275 * 0.29231 * 17 8 5 19 19 C 1.50706 * 119.36752 * 179.97438 * 18 17 8 20 20 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47225 * 299.99905 * 1 2 3 22 22 H 1.09003 * 109.47487 * 60.00339 * 1 2 3 23 23 H 1.07997 * 120.07580 * 0.02562 * 4 3 2 24 24 H 0.97005 * 120.00170 * 185.04003 * 12 11 9 25 25 H 1.08006 * 119.97848 * 180.27296 * 17 8 5 26 26 H 1.08990 * 109.47102 * 90.00306 * 19 18 17 27 27 H 1.09000 * 109.46768 * 210.00558 * 19 18 17 28 28 H 1.08997 * 109.47012 * 330.00060 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2775 2.3653 -0.0005 5 6 1.9004 3.6108 0.0047 6 6 1.1241 4.8141 0.0102 7 7 0.5083 5.7687 0.0148 8 6 3.3654 3.6679 -0.0010 9 6 4.0324 4.9055 -0.0016 10 1 3.5428 5.7826 -0.3983 11 6 5.3354 4.9999 0.5078 12 7 5.8039 4.0578 1.2830 13 14 6.4017 6.4722 0.0781 14 1 6.1965 7.5430 1.0862 15 1 7.8297 6.0645 0.0727 16 1 6.0268 6.9795 -1.2663 17 6 4.0938 2.4614 0.0000 18 6 3.4369 1.2682 0.0000 19 6 4.2310 -0.0127 0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.1996 2.2994 -0.0005 24 1 6.6768 4.1574 1.6942 25 1 5.1737 2.4830 0.0003 26 1 4.4222 -0.3213 1.0281 27 1 3.6662 -0.7905 -0.5135 28 1 5.1790 0.1474 -0.5132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649773.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = -17.887038 kcal Electronic energy + Delta-G solvation = -13818.828106 eV Core-core repulsion = 11413.040652 eV Total energy + Delta-G solvation = -2405.787454 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55799 -38.31602 -36.97252 -35.51758 -33.39195 -31.17868 -28.39747 -27.91761 -26.79764 -22.74726 -22.64083 -19.80249 -19.06476 -17.32124 -17.02944 -16.32433 -16.23454 -15.62060 -14.75810 -14.61051 -14.52409 -14.02243 -13.83219 -13.63075 -13.54875 -13.17926 -12.97023 -12.63837 -12.46881 -12.30045 -12.24565 -11.71442 -11.55056 -11.39501 -10.95022 -9.42546 -8.93993 -8.75293 -6.39802 0.31517 0.97747 1.38220 1.47769 1.53362 2.00705 2.15086 2.33674 2.65407 2.85920 3.55088 3.61492 4.15793 4.43454 4.54068 4.55291 4.68957 4.83520 4.97024 5.02143 5.03026 5.17827 5.28196 5.37373 5.63310 5.66615 5.96904 6.11175 6.39861 6.63612 6.68918 6.91716 7.02213 8.12167 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.010409 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.970829 B = 2689.417543 C = 3549.787651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.332 6.332 3 C -0.003 4.003 4 C -0.112 4.112 5 C -0.194 4.194 6 C 0.306 3.694 7 N -0.529 5.529 8 C 0.113 3.887 9 C -0.466 4.466 10 H 0.069 0.931 11 C 0.046 3.954 12 N -0.789 5.789 13 Si 0.978 3.022 14 H -0.266 1.266 15 H -0.252 1.252 16 H -0.262 1.262 17 C -0.147 4.147 18 C -0.067 4.067 19 C -0.094 4.094 20 H 0.119 0.881 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.127 0.873 24 H 0.301 0.699 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -7.186 -1.366 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.248 6.248 3 C -0.047 4.047 4 C -0.133 4.133 5 C -0.200 4.200 6 C -0.002 4.002 7 N -0.209 5.209 8 C 0.108 3.892 9 C -0.494 4.494 10 H 0.087 0.913 11 C -0.175 4.175 12 N -0.412 5.412 13 Si 0.798 3.202 14 H -0.191 1.191 15 H -0.176 1.176 16 H -0.186 1.186 17 C -0.166 4.166 18 C -0.068 4.068 19 C -0.151 4.151 20 H 0.137 0.863 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.145 0.855 24 H 0.113 0.887 25 H 0.146 0.854 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.106 -6.026 -1.255 6.157 hybrid contribution 0.242 0.711 0.042 0.753 sum 0.136 -5.315 -1.213 5.453 Atomic orbital electron populations 1.23101 0.78464 1.04562 1.00912 1.85851 1.21567 1.26498 1.90879 1.18155 0.91366 0.83567 1.11594 1.20747 0.98634 0.90491 1.03392 1.16785 0.91217 0.86301 1.25721 1.25902 0.91109 0.92478 0.90759 1.80984 1.12246 1.11347 1.16319 1.18714 0.88636 0.94145 0.87719 1.19744 0.98952 0.95606 1.35064 0.91298 1.26740 0.98022 1.00530 0.92162 1.69689 1.19430 1.33125 1.18946 0.85241 0.77719 0.77338 0.79883 1.19053 1.17571 1.18604 1.20803 0.99696 0.89987 1.06116 1.19157 0.90859 0.96500 1.00311 1.20590 0.98719 0.93675 1.02119 0.86302 0.93433 0.93211 0.85521 0.88737 0.85422 0.91406 0.91046 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.79 113.37 1.11 1.74 15 2 O -0.33 -11.56 9.42 -90.11 -0.85 -12.41 15 3 C 0.00 -0.11 6.66 22.66 0.15 0.04 15 4 C -0.11 -4.68 8.73 22.65 0.20 -4.48 15 5 C -0.19 -9.29 5.94 -19.60 -0.12 -9.41 15 6 C 0.31 14.98 14.31 88.33 1.26 16.24 15 7 N -0.53 -26.30 18.54 19.01 0.35 -25.95 15 8 C 0.11 5.71 5.73 -19.86 -0.11 5.60 15 9 C -0.47 -23.79 8.56 23.33 0.20 -23.59 15 10 H 0.07 3.62 7.39 -2.91 -0.02 3.60 15 11 C 0.05 2.12 5.15 85.34 0.44 2.56 15 12 N -0.79 -36.42 10.97 21.87 0.24 -36.18 15 13 Si 0.98 35.51 29.60 68.60 2.03 37.54 15 14 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 15 H -0.25 -8.32 7.11 99.48 0.71 -7.62 15 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 17 C -0.15 -6.86 8.24 22.46 0.18 -6.68 15 18 C -0.07 -2.79 5.85 -20.07 -0.12 -2.91 15 19 C -0.09 -3.16 9.73 71.24 0.69 -2.46 15 20 H 0.12 2.20 8.14 -2.39 -0.02 2.19 15 21 H 0.05 1.19 7.63 -2.39 -0.02 1.17 15 22 H 0.05 1.22 7.63 -2.39 -0.02 1.20 15 23 H 0.13 4.62 6.21 -2.91 -0.02 4.60 15 24 H 0.30 12.28 8.30 -92.70 -0.77 11.51 15 25 H 0.13 6.03 6.19 -2.91 -0.02 6.01 15 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.07 2.20 7.46 -2.39 -0.02 2.18 15 28 H 0.07 2.06 8.07 -2.39 -0.02 2.04 15 Total: -1.00 -56.04 253.69 6.85 -49.19 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.18 Total: 11.16 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.89 Total: -23.35 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.59 Total: -62.13 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.85 Total: -12.41 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -56.04 6.85 -49.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649773.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.301 kcal (2) G-P(sol) polarization free energy of solvation -56.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds