Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35743 * 116.99973 * 2 1 4 4 C 1.37874 * 120.07967 * 359.97438 * 3 2 1 5 5 C 1.40747 * 119.72180 * 179.97438 * 4 3 2 6 6 C 1.41046 * 120.05667 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99420 * 334.34586 * 6 5 4 8 8 C 1.40158 * 119.99786 * 154.34531 * 6 5 4 9 9 N 1.30689 * 120.00553 * 343.20751 * 8 6 5 10 10 Si 1.86803 * 119.99805 * 163.20459 * 8 6 5 11 11 H 1.48502 * 109.47180 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46880 * 120.00092 * 10 8 6 13 13 H 1.48492 * 109.47500 * 240.00179 * 10 8 6 14 14 C 1.41033 * 119.88674 * 0.02562 * 5 4 3 15 15 C 1.36095 * 120.16220 * 359.97438 * 14 5 4 16 16 C 1.50703 * 119.86034 * 180.02562 * 15 14 5 17 17 C 1.40181 * 120.27922 * 0.27794 * 15 14 5 18 18 C 1.43202 * 119.94694 * 179.72493 * 17 15 14 19 19 N 3.52879 * 165.75796 * 181.03428 * 2 1 3 20 20 H 1.09003 * 109.47158 * 300.00529 * 1 2 3 21 21 H 1.09001 * 109.47215 * 60.00660 * 1 2 3 22 22 H 1.08996 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.14079 * 0.02562 * 4 3 2 24 24 H 0.96997 * 120.00566 * 179.97438 * 9 8 6 25 25 H 1.08001 * 119.91533 * 179.97438 * 14 5 4 26 26 H 1.08993 * 109.47188 * 90.00059 * 16 15 14 27 27 H 1.09007 * 109.46943 * 330.00371 * 16 15 14 28 28 H 1.08994 * 109.47110 * 210.00631 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2960 2.3668 -0.0005 5 6 1.9428 3.6169 0.0000 6 6 1.1831 4.8053 0.0000 7 1 0.1821 4.8062 -0.4053 8 6 1.7275 5.9849 0.5260 9 7 2.7786 5.9309 1.3007 10 14 0.9505 7.6344 0.1197 11 1 -0.2198 7.4245 -0.7700 12 1 0.5064 8.2946 1.3736 13 1 1.9468 8.4952 -0.5669 14 6 3.3517 3.6791 0.0006 15 6 4.0868 2.5337 0.0011 16 6 5.5920 2.6082 0.0023 17 6 3.4497 1.2851 -0.0048 18 6 4.2302 0.0844 -0.0102 19 7 4.8493 -0.8680 -0.0157 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 0.2172 2.3144 -0.0005 24 1 3.1555 6.7473 1.6645 25 1 3.8485 4.6381 0.0006 26 1 5.9541 2.6261 1.0301 27 1 5.9113 3.5151 -0.5113 28 1 5.9992 1.7373 -0.5114 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649880.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = -21.642832 kcal Electronic energy + Delta-G solvation = -13813.436954 eV Core-core repulsion = 11407.486636 eV Total energy + Delta-G solvation = -2405.950318 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77718 -38.53018 -37.20480 -35.58094 -33.10653 -31.36377 -28.37352 -27.70016 -27.37821 -23.48384 -21.76234 -19.45250 -19.32294 -17.49015 -17.27139 -16.59542 -16.50490 -15.16059 -14.93783 -14.77486 -14.57993 -13.94998 -13.83647 -13.54506 -13.42505 -13.06496 -12.90021 -12.82350 -12.63724 -12.36055 -12.14677 -11.87076 -11.55041 -11.38556 -10.93040 -9.40090 -8.88065 -8.74916 -6.51045 0.43534 1.12951 1.43685 1.47635 1.60478 2.01470 2.18350 2.25112 2.54885 2.83755 3.55438 3.62905 4.25015 4.43264 4.48226 4.50583 4.71809 4.84204 4.88636 4.90729 4.98076 5.08233 5.19270 5.32315 5.67306 5.90660 5.98760 6.16258 6.40663 6.61654 6.77329 6.83609 7.01214 8.16917 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.009537 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.334190 B = 2935.348892 C = 3707.650548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.345 6.345 3 C 0.201 3.799 4 C -0.328 4.328 5 C 0.130 3.870 6 C -0.457 4.457 7 H 0.092 0.908 8 C 0.040 3.960 9 N -0.791 5.791 10 Si 0.986 3.014 11 H -0.254 1.254 12 H -0.266 1.266 13 H -0.263 1.263 14 C -0.201 4.201 15 C -0.002 4.002 16 C -0.104 4.104 17 C -0.230 4.230 18 C 0.308 3.692 19 N -0.525 5.525 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.119 0.881 23 H 0.124 0.876 24 H 0.298 0.702 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 2.675 -1.483 5.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C 0.153 3.847 4 C -0.349 4.349 5 C 0.126 3.874 6 C -0.484 4.484 7 H 0.110 0.890 8 C -0.180 4.180 9 N -0.414 5.414 10 Si 0.806 3.194 11 H -0.177 1.177 12 H -0.191 1.191 13 H -0.187 1.187 14 C -0.221 4.221 15 C -0.004 4.004 16 C -0.160 4.160 17 C -0.237 4.237 18 C -0.001 4.001 19 N -0.205 5.205 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.137 0.863 23 H 0.142 0.858 24 H 0.110 0.890 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.943 1.133 -1.333 3.424 hybrid contribution -0.718 1.044 0.086 1.270 sum -3.661 2.177 -1.247 4.438 Atomic orbital electron populations 1.23231 0.76752 1.04802 1.02125 1.85926 1.23463 1.27914 1.88513 1.18693 0.90133 0.84039 0.91824 1.21024 0.98844 0.91144 1.23863 1.17874 0.92640 0.92463 0.84467 1.20140 1.01933 0.93367 1.32988 0.88980 1.26915 0.94527 1.04906 0.91685 1.69786 1.18821 1.33036 1.19757 0.85076 0.79441 0.75521 0.79349 1.17742 1.19071 1.18727 1.20790 0.93801 0.96651 1.10841 1.19235 0.95853 0.90460 0.94888 1.20743 0.90635 1.02294 1.02372 1.14882 0.88074 0.87163 1.33582 1.25758 0.91612 0.92138 0.90597 1.81009 1.11308 1.11611 1.16570 0.92342 0.92024 0.86304 0.85776 0.89036 0.86266 0.90913 0.90122 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.81 113.37 1.11 1.84 15 2 O -0.34 -13.87 9.92 -90.67 -0.90 -14.77 15 3 C 0.20 8.96 6.68 22.77 0.15 9.11 15 4 C -0.33 -14.65 8.77 22.80 0.20 -14.45 15 5 C 0.13 6.22 5.57 -21.29 -0.12 6.11 15 6 C -0.46 -21.13 9.04 23.43 0.21 -20.92 15 7 H 0.09 4.01 7.90 -2.91 -0.02 3.99 15 8 C 0.04 1.72 5.15 85.33 0.44 2.16 15 9 N -0.79 -35.59 10.95 21.86 0.24 -35.35 15 10 Si 0.99 32.24 29.59 68.60 2.03 34.27 15 11 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 12 H -0.27 -8.44 7.11 99.48 0.71 -7.73 15 13 H -0.26 -8.34 7.11 99.48 0.71 -7.63 15 14 C -0.20 -9.49 8.23 22.46 0.18 -9.31 15 15 C 0.00 -0.08 5.87 -19.89 -0.12 -0.19 15 16 C -0.10 -3.81 9.59 71.24 0.68 -3.13 15 17 C -0.23 -10.55 5.78 -20.97 -0.12 -10.67 15 18 C 0.31 14.09 13.29 88.33 1.17 15.26 15 19 N -0.52 -24.39 18.54 19.00 0.35 -24.04 15 20 H 0.06 1.62 7.66 -2.39 -0.02 1.60 15 21 H 0.06 1.66 7.66 -2.39 -0.02 1.64 15 22 H 0.12 2.60 8.14 -2.39 -0.02 2.59 15 23 H 0.12 4.98 6.29 -2.91 -0.02 4.96 15 24 H 0.30 11.90 8.29 -92.71 -0.77 11.13 15 25 H 0.12 5.69 6.18 -2.91 -0.02 5.67 15 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.08 2.65 8.08 -2.38 -0.02 2.63 15 28 H 0.05 1.92 7.06 -2.39 -0.02 1.91 15 Total: -1.00 -54.95 253.49 6.70 -48.24 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.18 Total: 15.84 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 3.80 Total: -24.20 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.59 Total: -59.39 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.90 Total: -14.77 kcal Atomic # 14 Polarization: 32.24 SS G_CDS: 2.03 Total: 34.27 kcal Total: -54.95 6.70 -48.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649880.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.599 kcal (2) G-P(sol) polarization free energy of solvation -54.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds