Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35914 * 117.00086 * 2 1 4 4 C 1.38871 * 119.85041 * 359.72451 * 3 2 1 5 5 C 1.39873 * 120.29375 * 179.72594 * 4 3 2 6 6 C 1.43192 * 120.00783 * 180.25730 * 5 4 3 7 7 N 5.84259 * 80.82199 * 359.97438 * 2 1 3 8 8 C 1.39098 * 119.98601 * 0.57331 * 5 4 3 9 9 C 1.50693 * 120.14808 * 179.68387 * 8 5 4 10 10 C 1.40500 * 119.70275 * 359.70395 * 8 5 4 11 11 C 1.41445 * 120.14510 * 180.02562 * 10 8 5 12 12 H 1.08001 * 119.99768 * 333.63126 * 11 10 8 13 13 C 1.39919 * 120.00416 * 153.62388 * 11 10 8 14 14 N 1.30840 * 119.99443 * 343.96155 * 13 11 10 15 15 Si 1.86799 * 120.00456 * 163.96208 * 13 11 10 16 16 H 1.48500 * 109.47088 * 89.99887 * 15 13 11 17 17 H 1.48494 * 109.46895 * 210.00169 * 15 13 11 18 18 H 1.48499 * 109.46490 * 329.99866 * 15 13 11 19 19 C 1.38192 * 119.84725 * 179.97438 * 3 2 1 20 20 H 1.09004 * 109.46980 * 299.99998 * 1 2 3 21 21 H 1.09000 * 109.47222 * 59.99732 * 1 2 3 22 22 H 1.09003 * 109.47503 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.85187 * 359.97438 * 4 3 2 24 24 H 1.09003 * 109.47468 * 270.01907 * 9 8 5 25 25 H 1.09003 * 109.47561 * 30.01778 * 9 8 5 26 26 H 1.08997 * 109.47461 * 150.01936 * 9 8 5 27 27 H 0.97002 * 120.00027 * 180.02562 * 14 13 11 28 28 H 1.08001 * 120.00024 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2866 2.3737 -0.0058 5 6 1.9120 3.6248 -0.0001 6 6 1.1230 4.8198 -0.0005 7 7 0.4970 5.7678 -0.0026 8 6 3.3005 3.7081 -0.0006 9 6 3.9780 5.0541 -0.0016 10 6 4.0684 2.5315 -0.0006 11 6 5.4809 2.6052 -0.0005 12 1 5.9765 3.4703 -0.4159 13 6 6.2362 1.5577 0.5378 14 7 5.6657 0.6704 1.3119 15 14 8.0591 1.4257 0.1515 16 1 8.8364 2.1783 1.1686 17 1 8.4675 -0.0018 0.1728 18 1 8.3222 1.9959 -1.1942 19 6 3.4262 1.2796 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.2084 2.3116 -0.0107 24 1 4.1407 5.3782 -1.0295 25 1 3.3467 5.7791 0.5123 26 1 4.9366 4.9788 0.5116 27 1 6.1893 -0.0557 1.6854 28 1 4.0120 0.3723 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -16.635711 kcal Electronic energy + Delta-G solvation = -13826.591426 eV Core-core repulsion = 11420.858233 eV Total energy + Delta-G solvation = -2405.733193 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67890 -38.74647 -37.32878 -35.35164 -32.68378 -31.87583 -28.91008 -27.23303 -26.63716 -23.99178 -21.77122 -20.37264 -18.17079 -17.38720 -17.14574 -16.40361 -16.30986 -15.77293 -14.99274 -14.85202 -14.72013 -14.06101 -13.88552 -13.74453 -13.35438 -12.99466 -12.81393 -12.74881 -12.60316 -12.43880 -12.09297 -11.69375 -11.45993 -11.39943 -10.93767 -9.44795 -8.79842 -8.54998 -6.37536 0.26186 0.93279 1.47175 1.53141 1.61128 1.69717 2.18906 2.26724 2.71479 2.81965 3.12535 3.62517 4.33605 4.45031 4.50655 4.55283 4.60637 4.78244 4.82883 4.96192 5.13493 5.22464 5.29711 5.47040 5.67951 5.80295 5.91265 6.07356 6.43353 6.53809 6.86065 6.91269 6.94446 8.34183 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.010918 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.615046 B = 2563.845497 C = 3575.646341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.343 6.343 3 C 0.130 3.870 4 C -0.267 4.267 5 C 0.006 3.994 6 C 0.294 3.706 7 N -0.473 5.473 8 C -0.170 4.170 9 C -0.086 4.086 10 C 0.111 3.889 11 C -0.475 4.475 12 H 0.094 0.906 13 C 0.037 3.963 14 N -0.816 5.816 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.255 1.255 19 C -0.196 4.196 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.118 0.882 23 H 0.131 0.869 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.290 0.710 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -1.725 -1.775 2.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.258 6.258 3 C 0.085 3.915 4 C -0.290 4.290 5 C 0.003 3.997 6 C -0.019 4.019 7 N -0.150 5.150 8 C -0.174 4.174 9 C -0.143 4.143 10 C 0.109 3.891 11 C -0.503 4.503 12 H 0.112 0.888 13 C -0.179 4.179 14 N -0.441 5.441 15 Si 0.801 3.199 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.179 1.179 19 C -0.217 4.217 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.136 0.864 23 H 0.149 0.851 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.363 -0.648 -1.625 2.940 hybrid contribution 0.619 -0.568 0.095 0.845 sum -1.744 -1.216 -1.530 2.619 Atomic orbital electron populations 1.23195 0.77557 1.04805 1.01592 1.86017 1.22716 1.27517 1.89545 1.18690 0.91976 0.83581 0.97256 1.20547 0.98884 0.90075 1.19445 1.15467 0.90736 0.86531 1.07015 1.25949 0.91681 0.92427 0.91866 1.81096 1.10933 1.11490 1.11503 1.20091 0.90748 0.96219 1.10323 1.20468 1.00349 0.92105 1.01367 1.17348 0.93835 0.89402 0.88561 1.19859 0.90893 1.04658 1.34893 0.88789 1.26767 1.05665 0.93612 0.91882 1.69876 1.40573 1.11888 1.21734 0.85217 0.76114 0.78475 0.80097 1.18758 1.19647 1.17884 1.20736 0.90388 0.98979 1.11583 0.92720 0.92317 0.86410 0.85147 0.91814 0.93589 0.91108 0.89924 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.75 15 2 O -0.34 -13.71 10.49 -92.58 -0.97 -14.68 15 3 C 0.13 5.77 6.67 22.41 0.15 5.91 15 4 C -0.27 -10.88 8.75 22.82 0.20 -10.68 15 5 C 0.01 0.26 5.72 -21.43 -0.12 0.14 15 6 C 0.29 11.65 13.77 88.33 1.22 12.87 15 7 N -0.47 -18.94 18.54 19.00 0.35 -18.59 15 8 C -0.17 -7.54 5.98 -19.11 -0.11 -7.66 15 9 C -0.09 -3.32 8.99 71.23 0.64 -2.68 15 10 C 0.11 5.47 5.55 -21.34 -0.12 5.36 15 11 C -0.47 -22.83 8.11 23.47 0.19 -22.64 15 12 H 0.09 4.23 6.89 -2.91 -0.02 4.21 15 13 C 0.04 1.73 5.16 85.25 0.44 2.16 15 14 N -0.82 -40.01 10.97 21.82 0.24 -39.77 15 15 Si 0.98 35.12 29.59 68.60 2.03 37.15 15 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 17 H -0.27 -9.50 7.11 99.48 0.71 -8.79 15 18 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 19 C -0.20 -9.76 8.60 22.86 0.20 -9.57 15 20 H 0.05 1.42 7.66 -2.39 -0.02 1.40 15 21 H 0.06 1.48 7.64 -2.39 -0.02 1.46 15 22 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.13 4.54 6.26 -2.91 -0.02 4.52 15 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.05 1.67 7.08 -2.39 -0.02 1.65 15 26 H 0.07 2.71 6.78 -2.39 -0.02 2.69 15 27 H 0.29 12.93 8.30 -92.71 -0.77 12.16 15 28 H 0.11 5.91 6.21 -2.91 -0.02 5.89 15 Total: -1.00 -54.29 251.09 6.63 -47.67 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.19 Total: 13.25 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.79 Total: -25.03 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.59 Total: -58.36 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.97 Total: -14.68 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -54.29 6.63 -47.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.031 kcal (2) G-P(sol) polarization free energy of solvation -54.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds