Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00312 * 2 1 4 4 O 1.20831 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00405 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.88332 * 85.98044 * 5 3 2 7 7 H 1.08003 * 120.00010 * 121.43114 * 6 5 3 8 8 C 1.37877 * 120.00389 * 301.43515 * 6 5 3 9 9 N 1.31515 * 119.99713 * 345.24439 * 8 6 5 10 10 Si 1.86792 * 120.00336 * 165.24558 * 8 6 5 11 11 H 1.48504 * 109.47238 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47454 * 59.99513 * 10 8 6 13 13 H 1.48502 * 109.47146 * 299.99838 * 10 8 6 14 14 C 1.54325 * 109.88887 * 207.01669 * 5 3 2 15 15 C 1.55138 * 103.01812 * 141.84809 * 14 5 3 16 16 H 1.09000 * 110.99285 * 82.44122 * 15 14 5 17 17 F 1.39900 * 110.98779 * 206.25149 * 15 14 5 18 18 C 1.54902 * 101.65561 * 324.34494 * 15 14 5 19 19 N 1.47443 * 109.88574 * 324.94924 * 5 3 2 20 20 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46894 * 300.00559 * 1 2 3 22 22 H 1.08998 * 109.46755 * 60.00262 * 1 2 3 23 23 H 0.96999 * 119.99972 * 354.34597 * 9 8 6 24 24 H 1.08999 * 110.70004 * 260.23086 * 14 5 3 25 25 H 1.08999 * 110.70571 * 23.46215 * 14 5 3 26 26 H 1.08996 * 110.37619 * 155.90148 * 18 15 14 27 27 H 1.08998 * 110.37569 * 278.13534 * 18 15 14 28 28 H 1.00898 * 111.00239 * 3.69644 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0828 1.2028 -1.4144 7 1 4.6837 2.0076 -1.8116 8 6 3.7882 0.1095 -2.2012 9 7 3.3161 -0.9880 -1.6515 10 14 4.0598 0.1871 -4.0476 11 1 3.6682 -1.1077 -4.6604 12 1 5.4938 0.4537 -4.3264 13 1 3.2325 1.2772 -4.6242 14 6 4.0232 2.5933 0.6587 15 6 5.2842 2.1669 1.4556 16 1 6.1620 2.1358 0.8101 17 9 5.4974 3.0151 2.5475 18 6 4.8908 0.7445 1.9263 19 7 4.1269 0.1674 0.7952 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2521 -1.0582 -0.6862 24 1 4.2782 3.3346 -0.0986 25 1 3.2540 2.9753 1.3299 26 1 5.7827 0.1502 2.1246 27 1 4.2660 0.7991 2.8177 28 1 3.3973 -0.4467 1.1246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642866231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = -130.117029 kcal Electronic energy + Delta-G solvation = -15652.602901 eV Core-core repulsion = 12811.179565 eV Total energy + Delta-G solvation = -2841.423337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.18013 -39.78683 -37.12532 -35.43935 -32.70676 -29.31889 -28.63479 -26.77129 -24.40080 -22.10017 -20.77960 -19.52907 -17.52873 -16.93655 -16.40963 -15.74915 -15.31030 -14.45605 -14.11826 -13.77072 -13.39430 -13.21510 -12.99918 -12.57899 -12.40456 -11.50684 -11.37068 -11.23740 -11.07798 -10.79046 -10.29982 -10.16439 -10.10771 -9.93370 -9.61131 -9.20078 -8.46784 -7.48799 -6.43477 -4.28688 3.22649 3.40949 3.42922 3.59350 3.69199 4.43060 4.79163 4.93685 5.10408 5.29590 5.38046 5.58684 5.67326 5.74440 5.90049 5.94952 6.06311 6.22819 6.31743 6.52131 6.66362 7.29210 7.56381 7.78702 8.15226 8.24031 8.77438 8.81537 9.48832 10.94075 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.014581 C = 0.011122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.225186 B = 1919.841971 C = 2516.906531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.342 6.342 3 C 0.452 3.548 4 O -0.543 6.543 5 C 0.235 3.765 6 C -0.586 4.586 7 H 0.066 0.934 8 C 0.034 3.966 9 N -0.850 5.850 10 Si 1.061 2.939 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.288 1.288 14 C -0.133 4.133 15 C 0.080 3.920 16 H 0.104 0.896 17 F -0.218 7.218 18 C 0.023 3.977 19 N -0.654 5.654 20 H 0.090 0.910 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.297 0.703 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 1.041 4.088 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.257 6.257 3 C 0.296 3.704 4 O -0.433 6.433 5 C 0.145 3.855 6 C -0.623 4.623 7 H 0.084 0.916 8 C -0.180 4.180 9 N -0.484 5.484 10 Si 0.889 3.111 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.214 1.214 14 C -0.172 4.172 15 C 0.044 3.956 16 H 0.122 0.878 17 F -0.199 7.199 18 C -0.108 4.108 19 N -0.289 5.289 20 H 0.108 0.892 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.167 0.335 2.338 2.368 hybrid contribution -0.834 1.290 1.974 2.501 sum -1.001 1.624 4.312 4.715 Atomic orbital electron populations 1.23037 0.79576 1.02357 1.01048 1.86760 1.21064 1.34272 1.83628 1.26089 0.93677 0.80787 0.69818 1.90485 1.67502 1.36946 1.48372 1.19244 0.82276 0.87335 0.96611 1.21588 1.38158 1.08486 0.94064 0.91623 1.25846 0.93805 0.91978 1.06372 1.70603 1.36015 1.25030 1.16742 0.83669 0.76647 0.76181 0.74629 1.20560 1.21054 1.21438 1.23170 0.95980 0.98615 0.99478 1.22673 1.00129 0.88282 0.84540 0.87825 1.92740 1.96379 1.73169 1.57570 1.23364 0.99431 0.94115 0.93845 1.63051 1.29299 1.17940 1.18612 0.89167 0.93432 0.92827 0.88777 0.89423 0.91336 0.90141 0.94317 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 101.05 1.07 1.70 15 2 O -0.34 -7.92 7.19 -39.26 -0.28 -8.20 15 3 C 0.45 11.24 6.19 36.00 0.22 11.46 15 4 O -0.54 -14.12 15.73 -18.75 -0.29 -14.42 15 5 C 0.23 5.66 0.75 -132.92 -0.10 5.56 15 6 C -0.59 -15.58 8.16 -34.44 -0.28 -15.86 15 7 H 0.07 1.72 7.55 -52.48 -0.40 1.33 15 8 C 0.03 0.91 5.12 -17.82 -0.09 0.82 15 9 N -0.85 -23.64 12.58 55.43 0.70 -22.95 15 10 Si 1.06 23.96 29.93 -169.99 -5.09 18.87 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 14 C -0.13 -2.87 5.46 -24.91 -0.14 -3.01 15 15 C 0.08 1.52 4.85 -24.60 -0.12 1.41 15 16 H 0.10 1.90 8.14 -51.93 -0.42 1.47 15 17 F -0.22 -4.03 17.24 2.25 0.04 -3.99 15 18 C 0.02 0.42 7.39 -2.11 -0.02 0.41 15 19 N -0.65 -14.56 5.51 -99.21 -0.55 -15.11 15 20 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.05 0.80 8.13 -51.93 -0.42 0.38 15 22 H 0.05 1.00 8.13 -51.93 -0.42 0.58 15 23 H 0.30 8.03 4.13 -40.82 -0.17 7.86 15 24 H 0.09 1.87 7.62 -51.93 -0.40 1.47 15 25 H 0.07 1.48 7.41 -51.93 -0.38 1.10 15 26 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 28 H 0.33 7.23 6.68 -39.29 -0.26 6.96 15 LS Contribution 240.19 15.07 3.62 3.62 Total: -1.00 -29.76 240.19 -4.25 -34.01 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.94 Total: 5.67 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.55 Total: 2.49 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.15 Total: -38.05 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.58 Total: -22.62 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.09 Total: 18.87 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.76 -4.25 -34.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642866231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.106 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds