Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00312 * 2 1 4 4 O 1.20831 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00405 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.88332 * 85.98044 * 5 3 2 7 7 H 1.08003 * 120.00010 * 121.43114 * 6 5 3 8 8 C 1.37877 * 120.00389 * 301.43515 * 6 5 3 9 9 N 1.31515 * 119.99713 * 345.24439 * 8 6 5 10 10 Si 1.86792 * 120.00336 * 165.24558 * 8 6 5 11 11 H 1.48504 * 109.47238 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47454 * 59.99513 * 10 8 6 13 13 H 1.48502 * 109.47146 * 299.99838 * 10 8 6 14 14 C 1.54325 * 109.88887 * 207.01669 * 5 3 2 15 15 C 1.55138 * 103.01812 * 141.84809 * 14 5 3 16 16 H 1.09000 * 110.99285 * 82.44122 * 15 14 5 17 17 F 1.39900 * 110.98779 * 206.25149 * 15 14 5 18 18 C 1.54902 * 101.65561 * 324.34494 * 15 14 5 19 19 N 1.47443 * 109.88574 * 324.94924 * 5 3 2 20 20 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46894 * 300.00559 * 1 2 3 22 22 H 1.08998 * 109.46755 * 60.00262 * 1 2 3 23 23 H 0.96999 * 119.99972 * 354.34597 * 9 8 6 24 24 H 1.08999 * 110.70004 * 260.23086 * 14 5 3 25 25 H 1.08999 * 110.70571 * 23.46215 * 14 5 3 26 26 H 1.08996 * 110.37619 * 155.90148 * 18 15 14 27 27 H 1.08998 * 110.37569 * 278.13534 * 18 15 14 28 28 H 1.00898 * 111.00239 * 3.69644 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0828 1.2028 -1.4144 7 1 4.6837 2.0076 -1.8116 8 6 3.7882 0.1095 -2.2012 9 7 3.3161 -0.9880 -1.6515 10 14 4.0598 0.1871 -4.0476 11 1 3.6682 -1.1077 -4.6604 12 1 5.4938 0.4537 -4.3264 13 1 3.2325 1.2772 -4.6242 14 6 4.0232 2.5933 0.6587 15 6 5.2842 2.1669 1.4556 16 1 6.1620 2.1358 0.8101 17 9 5.4974 3.0151 2.5475 18 6 4.8908 0.7445 1.9263 19 7 4.1269 0.1674 0.7952 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2521 -1.0582 -0.6862 24 1 4.2782 3.3346 -0.0986 25 1 3.2540 2.9753 1.3299 26 1 5.7827 0.1502 2.1246 27 1 4.2660 0.7991 2.8177 28 1 3.3973 -0.4467 1.1246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642866231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = -149.524596 kcal Electronic energy + Delta-G solvation = -15653.444477 eV Core-core repulsion = 12811.179565 eV Total energy + Delta-G solvation = -2842.264912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.68293 -41.63370 -38.84997 -37.31072 -34.62122 -31.03536 -30.34046 -28.34854 -26.30654 -23.87851 -22.34163 -21.37702 -19.42144 -18.67059 -18.18364 -17.38559 -17.09946 -16.11374 -15.73243 -15.51636 -15.04060 -14.91105 -14.64515 -14.23196 -14.09820 -13.27775 -13.05063 -12.93491 -12.92571 -12.55378 -11.90775 -11.88605 -11.72545 -11.66877 -11.45907 -11.07494 -10.43747 -9.23946 -8.45469 -6.33411 1.32284 1.59739 1.65257 1.83945 1.98541 2.59597 3.07976 3.36530 3.38095 3.50910 3.79639 3.96120 4.23959 4.26175 4.28756 4.40749 4.50907 4.63912 4.78548 4.84395 5.09273 5.46573 5.77290 5.94903 6.19982 6.43157 6.76880 6.94157 7.50329 8.91957 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.014581 C = 0.011122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.225186 B = 1919.841971 C = 2516.906531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.449 3.551 4 O -0.564 6.564 5 C 0.226 3.774 6 C -0.607 4.607 7 H 0.059 0.941 8 C -0.006 4.006 9 N -0.876 5.876 10 Si 1.101 2.899 11 H -0.282 1.282 12 H -0.268 1.268 13 H -0.285 1.285 14 C -0.134 4.134 15 C 0.092 3.908 16 H 0.113 0.887 17 F -0.212 7.212 18 C 0.024 3.976 19 N -0.665 5.665 20 H 0.125 0.875 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.294 0.706 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 0.828 4.414 4.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.294 3.706 4 O -0.456 6.456 5 C 0.136 3.864 6 C -0.644 4.644 7 H 0.078 0.922 8 C -0.215 4.215 9 N -0.510 5.510 10 Si 0.924 3.076 11 H -0.207 1.207 12 H -0.193 1.193 13 H -0.211 1.211 14 C -0.173 4.173 15 C 0.055 3.945 16 H 0.130 0.870 17 F -0.193 7.193 18 C -0.106 4.106 19 N -0.299 5.299 20 H 0.143 0.857 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.169 0.117 2.684 2.692 hybrid contribution -1.009 1.360 1.953 2.585 sum -0.840 1.478 4.637 4.938 Atomic orbital electron populations 1.23388 0.76979 1.04840 1.01451 1.86706 1.23628 1.33333 1.83110 1.26153 0.94156 0.80911 0.69349 1.90459 1.68082 1.37586 1.49436 1.19285 0.81910 0.88913 0.96296 1.21834 1.38585 1.08274 0.95688 0.92241 1.26928 0.93267 0.91731 1.09561 1.70658 1.37763 1.25755 1.16803 0.83142 0.77514 0.76026 0.70922 1.20712 1.19290 1.21084 1.23133 0.97137 0.97527 0.99546 1.22556 0.99168 0.88290 0.84453 0.86963 1.92754 1.96257 1.73076 1.57241 1.23477 1.00035 0.93917 0.93130 1.62825 1.29300 1.17659 1.20149 0.85717 0.91888 0.93598 0.89109 0.89898 0.91801 0.87900 0.92826 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.56 113.37 1.20 2.15 15 2 O -0.35 -16.09 7.19 -51.41 -0.37 -16.46 15 3 C 0.45 22.19 6.19 71.24 0.44 22.63 15 4 O -0.56 -29.25 15.73 21.95 0.35 -28.91 15 5 C 0.23 10.78 0.75 2.38 0.00 10.79 15 6 C -0.61 -32.09 8.16 25.60 0.21 -31.88 15 7 H 0.06 3.12 7.55 -2.91 -0.02 3.10 15 8 C -0.01 -0.30 5.12 84.65 0.43 0.14 15 9 N -0.88 -48.33 12.58 21.45 0.27 -48.06 15 10 Si 1.10 47.82 29.93 68.60 2.05 49.87 15 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 12 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 13 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 14 C -0.13 -5.68 5.46 31.78 0.17 -5.51 15 15 C 0.09 3.31 4.85 31.98 0.16 3.46 15 16 H 0.11 3.88 8.14 -2.39 -0.02 3.86 15 17 F -0.21 -7.36 17.24 44.97 0.78 -6.59 15 18 C 0.02 0.84 7.39 86.71 0.64 1.48 15 19 N -0.67 -28.84 5.51 -467.81 -2.58 -31.42 15 20 H 0.12 3.49 8.14 -2.39 -0.02 3.47 15 21 H 0.06 2.02 8.13 -2.39 -0.02 2.00 15 22 H 0.05 1.68 8.13 -2.39 -0.02 1.66 15 23 H 0.29 15.82 4.13 -92.71 -0.38 15.44 15 24 H 0.08 3.52 7.62 -2.39 -0.02 3.50 15 25 H 0.06 2.72 7.41 -2.39 -0.02 2.70 15 26 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.33 14.21 6.68 -89.70 -0.60 13.61 15 Total: -1.00 -61.77 240.19 4.71 -57.06 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.96 Total: 21.24 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 3.25 Total: 3.26 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.31 Total: -79.48 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.02 Total: -45.36 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.78 Total: -6.59 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.87 kcal Total: -61.77 4.71 -57.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642866231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.467 kcal (2) G-P(sol) polarization free energy of solvation -61.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds