Wall clock time and date at job start Mon Mar 30 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.50705 * 109.90535 * 275.35300 * 5 3 2 7 7 H 1.08001 * 119.99548 * 239.29536 * 6 5 3 8 8 C 1.37877 * 120.00355 * 59.29895 * 6 5 3 9 9 N 1.31523 * 119.99746 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00353 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47400 * 59.99533 * 10 8 6 12 12 H 1.48498 * 109.47456 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46759 * 300.00068 * 10 8 6 14 14 C 1.53986 * 109.91957 * 154.04529 * 5 3 2 15 15 C 1.54591 * 105.14017 * 239.42304 * 14 5 3 16 16 H 1.09003 * 110.72540 * 96.39685 * 15 14 5 17 17 F 1.39898 * 110.87709 * 219.61130 * 15 14 5 18 18 C 1.54940 * 102.92500 * 338.03944 * 15 14 5 19 19 N 1.47909 * 109.91609 * 36.45114 * 5 3 2 20 20 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 21 21 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 22 22 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 23 23 H 0.97002 * 119.99939 * 179.97438 * 9 8 6 24 24 H 1.09002 * 110.30557 * 358.33636 * 14 5 3 25 25 H 1.08996 * 110.30995 * 120.50496 * 14 5 3 26 26 H 1.09005 * 110.66610 * 278.98655 * 18 15 14 27 27 H 1.08990 * 110.81208 * 155.91526 * 18 15 14 28 28 H 1.00897 * 110.99567 * 24.17615 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0851 1.1701 1.4116 7 1 4.6767 1.9708 1.8303 8 6 3.8045 0.0520 2.1681 9 7 3.0836 -0.9228 1.6583 10 14 4.4468 -0.0776 3.9173 11 1 3.9108 1.0465 4.7261 12 1 4.0106 -1.3672 4.5106 13 1 5.9305 -0.0155 3.9055 14 6 4.0223 2.6022 -0.6331 15 6 4.8966 2.1937 -1.8408 16 1 4.3113 2.1998 -2.7604 17 9 6.0087 3.0343 -1.9583 18 6 5.3348 0.7521 -1.4795 19 7 4.1283 0.1841 -0.8252 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.8865 -1.7096 2.1903 24 1 3.1593 3.1776 -0.9683 25 1 4.6093 3.1802 0.0806 26 1 6.1765 0.7681 -0.7870 27 1 5.5874 0.1877 -2.3770 28 1 3.4594 -0.1311 -1.5116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642866248.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:06 Heat of formation + Delta-G solvation = -141.977274 kcal Electronic energy + Delta-G solvation = -15610.180096 eV Core-core repulsion = 12768.242460 eV Total energy + Delta-G solvation = -2841.937635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.54699 -41.27668 -38.65358 -36.93390 -34.50193 -30.77322 -30.20738 -28.17716 -26.60168 -23.62569 -22.46516 -20.82039 -19.07773 -18.18519 -17.60115 -17.21662 -16.92958 -16.37616 -15.93354 -15.80589 -14.82377 -14.63147 -14.24968 -13.90979 -13.73954 -13.02171 -12.90800 -12.80457 -12.76001 -12.49578 -12.26201 -12.02849 -11.57779 -11.32447 -11.19804 -11.09888 -10.48601 -9.07404 -8.01828 -6.27944 1.43768 1.46296 1.52353 1.67191 2.33868 2.44858 3.16933 3.43218 3.62354 3.73763 3.89379 4.14860 4.41026 4.44636 4.49840 4.63970 4.74925 4.75898 4.93840 4.97905 5.31128 5.68734 5.80053 5.99223 6.10668 6.69426 6.83397 7.33025 7.41947 8.94128 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.015571 C = 0.011046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.053706 B = 1797.800963 C = 2534.338336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.474 3.526 4 O -0.582 6.582 5 C 0.240 3.760 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.043 3.957 9 N -0.828 5.828 10 Si 0.947 3.053 11 H -0.281 1.281 12 H -0.278 1.278 13 H -0.272 1.272 14 C -0.159 4.159 15 C 0.058 3.942 16 H 0.110 0.890 17 F -0.217 7.217 18 C 0.033 3.967 19 N -0.634 5.634 20 H 0.037 0.963 21 H 0.057 0.943 22 H 0.117 0.883 23 H 0.263 0.737 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -0.252 -5.720 5.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.321 3.679 4 O -0.476 6.476 5 C 0.150 3.850 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.166 4.166 9 N -0.460 5.460 10 Si 0.772 3.228 11 H -0.207 1.207 12 H -0.203 1.203 13 H -0.197 1.197 14 C -0.199 4.199 15 C 0.020 3.980 16 H 0.127 0.873 17 F -0.198 7.198 18 C -0.098 4.098 19 N -0.263 5.263 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.135 0.865 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.456 -0.587 -5.156 5.210 hybrid contribution -0.425 0.809 0.588 1.087 sum -0.881 0.222 -4.568 4.658 Atomic orbital electron populations 1.23300 0.78981 1.04041 1.00737 1.86974 1.21225 1.31967 1.81894 1.25177 0.93277 0.80675 0.68798 1.90444 1.68141 1.38050 1.50971 1.18999 0.83116 0.87212 0.95673 1.20906 1.36274 1.04705 0.96387 0.92564 1.25647 0.94553 0.95333 1.01114 1.70176 1.33140 1.06117 1.36526 0.85816 0.79104 0.77211 0.80627 1.20726 1.20337 1.19687 1.23341 1.00238 0.98706 0.97593 1.23411 0.84494 0.90930 0.99183 0.87274 1.92741 1.55705 1.73975 1.97358 1.23651 0.95869 0.90940 0.99292 1.63005 1.07341 1.33987 1.21938 0.94409 0.92396 0.86486 0.92797 0.90859 0.90873 0.90917 0.87585 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 10.56 113.37 1.20 2.06 15 2 O -0.31 -14.20 7.76 -51.46 -0.40 -14.60 15 3 C 0.47 23.36 6.07 71.24 0.43 23.79 15 4 O -0.58 -30.03 15.35 21.98 0.34 -29.70 15 5 C 0.24 11.46 0.68 2.18 0.00 11.46 15 6 C -0.55 -29.10 8.20 25.60 0.21 -28.89 15 7 H 0.06 3.04 7.34 -2.91 -0.02 3.01 15 8 C 0.04 2.24 5.25 84.65 0.44 2.69 15 9 N -0.83 -43.61 10.30 21.45 0.22 -43.39 15 10 Si 0.95 42.14 29.54 68.60 2.03 44.17 15 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 14 C -0.16 -6.73 5.88 31.47 0.18 -6.54 15 15 C 0.06 2.00 4.86 31.80 0.15 2.16 15 16 H 0.11 3.15 8.14 -2.39 -0.02 3.13 15 17 F -0.22 -7.73 17.20 44.97 0.77 -6.96 15 18 C 0.03 1.17 7.33 86.65 0.64 1.81 15 19 N -0.63 -27.20 6.34 -466.44 -2.96 -30.15 15 20 H 0.04 1.41 8.13 -2.39 -0.02 1.39 15 21 H 0.06 1.89 8.13 -2.39 -0.02 1.87 15 22 H 0.12 3.41 8.14 -2.38 -0.02 3.39 15 23 H 0.26 13.30 8.31 -92.71 -0.77 12.53 15 24 H 0.07 3.11 6.77 -2.39 -0.02 3.09 15 25 H 0.07 3.24 7.37 -2.39 -0.02 3.22 15 26 H 0.07 2.83 8.14 -2.38 -0.02 2.81 15 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 15 28 H 0.32 12.85 8.12 -89.70 -0.73 12.12 15 Total: -1.00 -60.68 243.39 3.71 -56.97 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.45 Total: 15.13 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 3.26 Total: 8.53 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.73 Total: -73.54 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.06 Total: -44.30 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.77 Total: -6.96 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -60.68 3.71 -56.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642866248.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.009 kcal (2) G-P(sol) polarization free energy of solvation -60.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds