Wall clock time and date at job start Mon Mar 30 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.60092 * 300.32290 * 12 11 10 14 14 C 1.52941 * 109.60222 * 179.97438 * 12 11 10 15 15 C 1.53704 * 112.48771 * 209.96823 * 14 12 11 16 16 S 1.83397 * 104.97137 * 2.82760 * 15 14 12 17 17 C 1.55154 * 109.60144 * 60.46255 * 12 11 10 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 20 20 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 21 21 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 22 22 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 23 23 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 24 24 H 0.96701 * 113.99654 * 59.29807 * 13 12 11 25 25 H 1.08992 * 108.88844 * 330.76380 * 14 12 11 26 26 H 1.09000 * 108.88625 * 89.31985 * 14 12 11 27 27 H 1.08999 * 110.34055 * 121.69976 * 15 14 12 28 28 H 1.09005 * 110.34642 * 243.84967 * 15 14 12 29 29 H 1.09007 * 111.12897 * 279.28039 * 17 12 11 30 30 H 1.08997 * 111.13401 * 43.45659 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 8 3.3570 -5.9436 -1.1596 14 6 1.8043 -7.3891 0.0019 15 6 2.6078 -8.4904 0.7119 16 16 4.1091 -7.6483 1.3448 17 6 3.4131 -5.9468 1.2742 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5566 0.8903 20 1 0.6247 -2.5571 -0.8897 21 1 2.8412 -3.5489 -0.7792 22 1 0.8796 -4.9813 0.8906 23 1 0.8815 -4.9816 -0.8894 24 1 3.8432 -5.1103 -1.2261 25 1 0.8446 -7.2724 0.5052 26 1 1.6265 -7.6941 -1.0293 27 1 2.0312 -8.9078 1.5373 28 1 2.8807 -9.2752 0.0063 29 1 4.2019 -5.2048 1.1500 30 1 2.8095 -5.7321 2.1560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705285944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:35 Heat of formation + Delta-G solvation = -61.147665 kcal Electronic energy + Delta-G solvation = -12885.770387 eV Core-core repulsion = 10613.550962 eV Total energy + Delta-G solvation = -2272.219425 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.82795 -34.96226 -33.62784 -32.50291 -29.40537 -27.12275 -25.29108 -23.04111 -21.73262 -20.16115 -17.47703 -16.55923 -16.47020 -15.37243 -15.08044 -14.42214 -13.97867 -13.85566 -13.65163 -12.74006 -12.53111 -12.17431 -11.92909 -11.74245 -11.64612 -11.44661 -10.94241 -10.70117 -10.66380 -10.35704 -10.14176 -9.67122 -8.72498 -8.49649 -7.67159 -7.62512 -6.46372 -4.16548 1.88033 2.34744 3.40509 3.43479 3.59413 4.16241 4.33616 4.48054 4.61289 4.83385 4.87543 5.18566 5.29503 5.33250 5.42792 5.55516 5.68932 5.75112 5.87671 5.94757 6.10444 6.77856 6.99351 7.55375 7.67250 7.94882 8.25246 8.45355 8.76687 9.55461 10.93496 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060967 B = 0.006009 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.155857 B = 4658.756175 C = 4846.246050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.185 3.815 10 N -0.680 5.680 11 C 0.036 3.964 12 C 0.135 3.865 13 O -0.550 6.550 14 C -0.118 4.118 15 C -0.064 4.064 16 S -0.307 6.307 17 C -0.069 4.069 18 H 0.267 0.733 19 H 0.020 0.980 20 H -0.022 1.022 21 H 0.328 0.672 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.380 0.620 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -13.583 0.520 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.905 3.095 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.312 5.312 11 C -0.096 4.096 12 C 0.092 3.908 13 O -0.357 6.357 14 C -0.157 4.157 15 C -0.212 4.212 16 S -0.080 6.080 17 C -0.217 4.217 18 H 0.077 0.923 19 H 0.038 0.962 20 H -0.004 1.004 21 H 0.145 0.855 22 H 0.094 0.906 23 H 0.051 0.949 24 H 0.229 0.771 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.646 -12.969 1.450 13.852 hybrid contribution -1.100 -0.740 -1.070 1.704 sum 3.546 -13.709 0.380 14.165 Atomic orbital electron populations 1.70777 1.06924 1.30460 1.46648 1.25889 0.96459 1.02856 0.93641 0.83430 0.74552 0.74708 0.76848 1.21347 1.21394 1.21017 1.21996 0.94847 0.91136 1.55702 0.92454 1.19669 0.91120 0.88716 0.94697 1.60674 1.20981 1.00839 1.48675 1.22584 0.95372 0.90560 1.01082 1.22036 0.89608 0.94394 0.84776 1.86522 1.62636 1.43371 1.43167 1.21907 0.98991 0.91815 1.02994 1.23840 0.95354 0.99892 1.02149 1.87708 1.25034 1.08129 1.87107 1.25015 1.01853 0.93775 1.01042 0.92279 0.96232 1.00423 0.85475 0.90590 0.94947 0.77054 0.89601 0.89275 0.89306 0.88532 0.86745 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.49 13.65 55.43 0.76 -26.73 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.08 24.94 29.90 -169.99 -5.08 19.86 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -16.63 9.32 -34.44 -0.32 -16.95 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.18 4.62 4.75 -4.98 -0.02 4.60 16 10 N -0.68 -13.39 6.09 -115.05 -0.70 -14.09 16 11 C 0.04 0.59 4.68 -3.82 -0.02 0.57 16 12 C 0.14 1.87 0.87 -89.51 -0.08 1.80 16 13 O -0.55 -8.00 12.79 -35.23 -0.45 -8.45 16 14 C -0.12 -1.38 5.57 -26.40 -0.15 -1.53 16 15 C -0.06 -0.71 7.38 37.52 0.28 -0.43 16 16 S -0.31 -4.25 23.13 -107.50 -2.49 -6.73 16 17 C -0.07 -0.96 6.15 38.30 0.24 -0.73 16 18 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 19 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 20 H -0.02 -0.58 8.01 -51.93 -0.42 -0.99 16 21 H 0.33 6.12 7.11 -39.29 -0.28 5.84 16 22 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.38 4.93 7.45 45.56 0.34 5.27 16 25 H 0.09 0.88 7.77 -51.93 -0.40 0.48 16 26 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.11 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -30.57 261.28 -7.82 -38.39 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.63 Total: 6.15 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.17 Total: -12.33 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.06 Total: -40.82 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.45 Total: -8.45 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.49 Total: -6.73 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.57 -7.82 -38.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705285944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds