Wall clock time and date at job start Mon Mar 30 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.60092 * 300.32290 * 12 11 10 14 14 C 1.52941 * 109.60222 * 179.97438 * 12 11 10 15 15 C 1.53704 * 112.48771 * 209.96823 * 14 12 11 16 16 S 1.83397 * 104.97137 * 2.82760 * 15 14 12 17 17 C 1.55154 * 109.60144 * 60.46255 * 12 11 10 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 20 20 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 21 21 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 22 22 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 23 23 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 24 24 H 0.96701 * 113.99654 * 59.29807 * 13 12 11 25 25 H 1.08992 * 108.88844 * 330.76380 * 14 12 11 26 26 H 1.09000 * 108.88625 * 89.31985 * 14 12 11 27 27 H 1.08999 * 110.34055 * 121.69976 * 15 14 12 28 28 H 1.09005 * 110.34642 * 243.84967 * 15 14 12 29 29 H 1.09007 * 111.12897 * 279.28039 * 17 12 11 30 30 H 1.08997 * 111.13401 * 43.45659 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 8 3.3570 -5.9436 -1.1596 14 6 1.8043 -7.3891 0.0019 15 6 2.6078 -8.4904 0.7119 16 16 4.1091 -7.6483 1.3448 17 6 3.4131 -5.9468 1.2742 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5566 0.8903 20 1 0.6247 -2.5571 -0.8897 21 1 2.8412 -3.5489 -0.7792 22 1 0.8796 -4.9813 0.8906 23 1 0.8815 -4.9816 -0.8894 24 1 3.8432 -5.1103 -1.2261 25 1 0.8446 -7.2724 0.5052 26 1 1.6265 -7.6941 -1.0293 27 1 2.0312 -8.9078 1.5373 28 1 2.8807 -9.2752 0.0063 29 1 4.2019 -5.2048 1.1500 30 1 2.8095 -5.7321 2.1560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705285944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:35 Heat of formation + Delta-G solvation = -84.006522 kcal Electronic energy + Delta-G solvation = -12886.761621 eV Core-core repulsion = 10613.550962 eV Total energy + Delta-G solvation = -2273.210659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03241 -36.73104 -34.73384 -34.39336 -30.64000 -28.69870 -26.82225 -24.65905 -23.39535 -21.26986 -19.29544 -17.94860 -17.61138 -16.89495 -16.32668 -15.71537 -15.55176 -15.27864 -15.17176 -14.20315 -13.98574 -13.74802 -13.21907 -13.07364 -12.93285 -12.86913 -12.53984 -12.42365 -11.94105 -11.88693 -11.47684 -10.95601 -10.64658 -10.63208 -9.37161 -8.72551 -8.71438 -6.44129 0.85465 1.32951 1.54611 1.62978 1.80967 2.54551 3.07406 3.12240 3.14976 3.47114 3.70988 3.87824 4.02447 4.16932 4.33734 4.55439 4.57421 4.65853 4.73250 4.75205 4.89924 4.94774 5.02070 5.63563 5.95295 6.31679 6.44263 6.53691 6.62179 7.37697 8.67670 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060967 B = 0.006009 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.155857 B = 4658.756175 C = 4846.246050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.036 4.036 3 Si 1.125 2.875 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.611 4.611 8 H 0.059 0.941 9 C 0.195 3.805 10 N -0.675 5.675 11 C 0.040 3.960 12 C 0.143 3.857 13 O -0.557 6.557 14 C -0.119 4.119 15 C -0.052 4.052 16 S -0.340 6.340 17 C -0.064 4.064 18 H 0.254 0.746 19 H 0.000 1.000 20 H -0.043 1.043 21 H 0.335 0.665 22 H 0.078 0.922 23 H 0.029 0.971 24 H 0.385 0.615 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -14.261 0.517 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.946 3.054 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.649 4.649 8 H 0.077 0.923 9 C 0.067 3.933 10 N -0.306 5.306 11 C -0.092 4.092 12 C 0.100 3.900 13 O -0.365 6.365 14 C -0.158 4.158 15 C -0.200 4.200 16 S -0.114 6.114 17 C -0.213 4.213 18 H 0.064 0.936 19 H 0.018 0.982 20 H -0.025 1.025 21 H 0.153 0.847 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.235 0.765 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.335 -13.688 1.446 14.762 hybrid contribution -1.316 -0.622 -1.077 1.811 sum 4.019 -14.309 0.369 14.868 Atomic orbital electron populations 1.70908 1.08005 1.29761 1.48800 1.27430 0.96498 1.06849 0.92619 0.82827 0.74125 0.70735 0.77740 1.19946 1.19214 1.20967 1.22385 0.95168 0.92433 1.54924 0.92285 1.19359 0.91241 0.89959 0.92711 1.60510 1.20088 1.00949 1.49095 1.22638 0.95983 0.89599 1.00980 1.22029 0.88845 0.94568 0.84595 1.86523 1.62699 1.43813 1.43457 1.21940 0.99452 0.90603 1.03760 1.23958 0.93550 0.99485 1.02977 1.87846 1.27473 1.08486 1.87570 1.24917 1.01545 0.93796 1.01010 0.93647 0.98229 1.02505 0.84667 0.90371 0.95304 0.76508 0.87948 0.88760 0.87111 0.87202 0.87662 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.65 21.45 0.29 -56.87 16 2 C -0.04 -2.06 5.46 84.65 0.46 -1.60 16 3 Si 1.12 49.35 29.90 68.60 2.05 51.40 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.61 -33.97 9.32 25.60 0.24 -33.73 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.20 9.90 4.75 85.56 0.41 10.31 16 10 N -0.67 -26.34 6.09 -517.91 -3.15 -29.49 16 11 C 0.04 1.25 4.68 86.30 0.40 1.66 16 12 C 0.14 3.73 0.87 -10.07 -0.01 3.73 16 13 O -0.56 -15.39 12.79 -148.98 -1.90 -17.30 16 14 C -0.12 -2.46 5.57 30.81 0.17 -2.29 16 15 C -0.05 -0.99 7.38 72.22 0.53 -0.46 16 16 S -0.34 -8.88 23.13 -56.49 -1.31 -10.19 16 17 C -0.06 -1.73 6.15 72.72 0.45 -1.28 16 18 H 0.25 15.68 7.22 -92.71 -0.67 15.01 16 19 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 20 H -0.04 -2.31 8.01 -2.38 -0.02 -2.33 16 21 H 0.34 12.31 7.11 -89.69 -0.64 11.67 16 22 H 0.08 2.45 8.11 -2.38 -0.02 2.43 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.39 9.57 7.45 -74.06 -0.55 9.02 16 25 H 0.10 1.80 7.77 -2.39 -0.02 1.78 16 26 H 0.09 1.90 8.06 -2.39 -0.02 1.88 16 27 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.10 2.99 8.14 -2.38 -0.02 2.98 16 30 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -64.62 261.28 -1.32 -65.93 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.05 Total: 20.17 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 2.65 Total: -23.66 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.86 Total: -86.36 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.90 Total: -17.30 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.31 Total: -10.19 kcal Total: -64.62 -1.32 -65.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705285944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.073 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds