Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.61068 * 63.88354 * 12 11 10 14 14 C 1.53861 * 109.61046 * 184.04576 * 12 11 10 15 15 C 1.55135 * 106.90030 * 167.17108 * 14 12 11 16 16 S 1.83457 * 102.20702 * 317.88516 * 15 14 12 17 17 C 1.54276 * 109.60941 * 303.54476 * 12 11 10 18 18 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 20 20 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 21 21 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 22 22 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 23 23 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 24 24 H 0.96699 * 113.99845 * 300.70569 * 13 12 11 25 25 H 1.08994 * 109.97451 * 286.53392 * 14 12 11 26 26 H 1.08999 * 109.97392 * 47.81577 * 14 12 11 27 27 H 1.09000 * 110.85493 * 199.70307 * 15 14 12 28 28 H 1.09005 * 111.02779 * 76.14421 * 15 14 12 29 29 H 1.08996 * 110.40599 * 330.92191 * 17 12 11 30 30 H 1.09003 * 110.39878 * 93.33658 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 8 3.2902 -6.0024 1.2087 14 6 1.8023 -7.3949 -0.1034 15 6 2.8796 -8.4633 -0.4271 16 16 3.9143 -7.6050 -1.6754 17 6 3.4738 -5.8895 -1.2110 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8403 -3.5488 -0.7819 22 1 0.8798 -4.9817 0.8886 23 1 0.8805 -4.9812 -0.8914 24 1 3.7708 -5.1742 1.3434 25 1 1.3177 -7.6300 0.8442 26 1 1.0615 -7.3593 -0.9022 27 1 2.4235 -9.3584 -0.8502 28 1 3.4647 -8.7098 0.4589 29 1 2.9591 -5.3935 -2.0338 30 1 4.3664 -5.3313 -0.9284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705285945.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -60.652226 kcal Electronic energy + Delta-G solvation = -12863.498787 eV Core-core repulsion = 10591.300847 eV Total energy + Delta-G solvation = -2272.197941 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.72898 -34.79708 -33.35009 -32.37370 -29.42933 -27.33222 -25.50921 -23.00006 -21.38081 -20.15042 -17.20344 -16.62089 -16.21550 -15.08714 -14.79113 -14.57289 -14.42199 -13.84756 -13.32477 -12.75334 -12.52277 -12.21837 -11.92509 -11.58751 -11.45967 -11.38770 -11.05879 -10.79326 -10.64089 -10.38407 -10.00981 -9.58545 -9.21501 -8.56688 -7.67939 -7.53225 -6.11000 -4.13851 1.83512 2.36471 3.27354 3.33848 3.37880 4.27644 4.34264 4.46986 4.56938 4.82495 5.06997 5.24834 5.27125 5.33789 5.46123 5.59090 5.67267 5.80725 5.91745 6.02569 6.19399 7.08916 7.27790 7.65525 7.85540 8.01189 8.18688 8.44143 8.94414 9.51636 11.00058 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060187 B = 0.005986 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.105612 B = 4676.524755 C = 4839.960347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.690 5.690 11 C 0.038 3.962 12 C 0.134 3.866 13 O -0.552 6.552 14 C -0.115 4.115 15 C -0.063 4.063 16 S -0.303 6.303 17 C -0.093 4.093 18 H 0.262 0.738 19 H -0.012 1.012 20 H 0.030 0.970 21 H 0.327 0.673 22 H 0.078 0.922 23 H 0.031 0.969 24 H 0.391 0.609 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -13.400 -1.260 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.322 5.322 11 C -0.094 4.094 12 C 0.091 3.909 13 O -0.360 6.360 14 C -0.154 4.154 15 C -0.211 4.211 16 S -0.078 6.078 17 C -0.242 4.242 18 H 0.072 0.928 19 H 0.006 0.994 20 H 0.048 0.952 21 H 0.144 0.856 22 H 0.097 0.903 23 H 0.049 0.951 24 H 0.241 0.759 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.373 -14.283 -1.349 14.998 hybrid contribution -0.501 2.002 -0.182 2.072 sum 3.871 -12.280 -1.531 12.967 Atomic orbital electron populations 1.69961 1.06129 1.26948 1.50561 1.24995 0.94892 0.99466 0.95162 0.86460 0.79788 0.82873 0.78079 1.20677 1.21174 1.19722 1.21149 0.93495 0.90151 1.50844 0.91920 1.19560 0.90487 0.87098 0.95985 1.60705 1.21550 1.01224 1.48691 1.22551 0.95253 0.90367 1.01243 1.21978 0.90130 0.95028 0.83725 1.86374 1.66203 1.43498 1.39878 1.22509 0.97551 0.91347 1.03981 1.24163 0.97749 0.99752 0.99477 1.87415 1.65188 1.06110 1.49042 1.24824 1.03208 0.94702 1.01450 0.92803 0.99412 0.95239 0.85563 0.90324 0.95098 0.75936 0.88839 0.89139 0.88254 0.88769 0.88406 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.26 9.32 -34.44 -0.32 -14.58 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.20 4.92 5.44 -4.98 -0.03 4.90 16 10 N -0.69 -13.59 6.01 -115.06 -0.69 -14.28 16 11 C 0.04 0.62 4.78 -3.82 -0.02 0.60 16 12 C 0.13 1.85 0.91 -89.51 -0.08 1.77 16 13 O -0.55 -8.13 12.86 -35.23 -0.45 -8.58 16 14 C -0.12 -1.34 5.46 -25.15 -0.14 -1.48 16 15 C -0.06 -0.71 7.27 38.29 0.28 -0.43 16 16 S -0.30 -4.08 23.26 -107.50 -2.50 -6.58 16 17 C -0.09 -1.26 5.29 37.83 0.20 -1.06 16 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 19 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 20 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.33 6.10 7.36 -39.29 -0.29 5.81 16 22 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.03 0.51 8.13 -51.93 -0.42 0.08 16 24 H 0.39 5.46 8.58 45.56 0.39 5.85 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.32 7.71 -51.93 -0.40 0.92 16 30 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -29.48 263.09 -7.81 -37.29 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.64 Total: 6.33 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.20 Total: -8.78 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.04 Total: -39.92 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.45 Total: -8.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.50 Total: -6.58 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.48 -7.81 -37.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705285945.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.366 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds