Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.61068 * 63.88354 * 12 11 10 14 14 C 1.53861 * 109.61046 * 184.04576 * 12 11 10 15 15 C 1.55135 * 106.90030 * 167.17108 * 14 12 11 16 16 S 1.83457 * 102.20702 * 317.88516 * 15 14 12 17 17 C 1.54276 * 109.60941 * 303.54476 * 12 11 10 18 18 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 20 20 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 21 21 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 22 22 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 23 23 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 24 24 H 0.96699 * 113.99845 * 300.70569 * 13 12 11 25 25 H 1.08994 * 109.97451 * 286.53392 * 14 12 11 26 26 H 1.08999 * 109.97392 * 47.81577 * 14 12 11 27 27 H 1.09000 * 110.85493 * 199.70307 * 15 14 12 28 28 H 1.09005 * 111.02779 * 76.14421 * 15 14 12 29 29 H 1.08996 * 110.40599 * 330.92191 * 17 12 11 30 30 H 1.09003 * 110.39878 * 93.33658 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 8 3.2902 -6.0024 1.2087 14 6 1.8023 -7.3949 -0.1034 15 6 2.8796 -8.4633 -0.4271 16 16 3.9143 -7.6050 -1.6754 17 6 3.4738 -5.8895 -1.2110 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8403 -3.5488 -0.7819 22 1 0.8798 -4.9817 0.8886 23 1 0.8805 -4.9812 -0.8914 24 1 3.7708 -5.1742 1.3434 25 1 1.3177 -7.6300 0.8442 26 1 1.0615 -7.3593 -0.9022 27 1 2.4235 -9.3584 -0.8502 28 1 3.4647 -8.7098 0.4589 29 1 2.9591 -5.3935 -2.0338 30 1 4.3664 -5.3313 -0.9284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705285945.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -82.667293 kcal Electronic energy + Delta-G solvation = -12864.453432 eV Core-core repulsion = 10591.300847 eV Total energy + Delta-G solvation = -2273.152586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.93347 -36.50922 -34.57782 -34.19336 -30.72511 -28.92267 -27.01041 -24.47333 -23.08596 -21.28381 -18.85853 -17.88410 -17.66433 -16.64033 -16.47248 -15.89129 -15.44906 -15.28552 -14.82670 -14.38234 -13.83234 -13.57080 -13.30345 -12.98697 -12.84701 -12.76740 -12.61598 -12.48600 -12.16621 -11.85240 -11.51455 -11.26004 -10.68835 -10.64963 -9.25012 -8.72704 -8.24590 -6.35751 0.82237 1.36763 1.41818 1.42974 1.54621 2.38837 3.09664 3.14781 3.30379 3.45000 3.76551 3.93027 4.10082 4.20403 4.46702 4.54692 4.61987 4.67490 4.74914 4.93709 5.02764 5.06493 5.22720 5.57830 5.97101 6.32593 6.60979 6.73572 6.84415 7.35486 8.87021 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060187 B = 0.005986 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.105612 B = 4676.524755 C = 4839.960347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.683 5.683 11 C 0.041 3.959 12 C 0.141 3.859 13 O -0.558 6.558 14 C -0.114 4.114 15 C -0.051 4.051 16 S -0.329 6.329 17 C -0.090 4.090 18 H 0.265 0.735 19 H -0.037 1.037 20 H 0.001 0.999 21 H 0.336 0.664 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.392 0.608 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -13.894 -1.334 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.315 5.315 11 C -0.091 4.091 12 C 0.098 3.902 13 O -0.366 6.366 14 C -0.153 4.153 15 C -0.199 4.199 16 S -0.103 6.103 17 C -0.239 4.239 18 H 0.074 0.926 19 H -0.019 1.019 20 H 0.019 0.981 21 H 0.154 0.846 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.243 0.757 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.256 -14.804 -1.427 15.774 hybrid contribution -0.790 2.080 -0.149 2.230 sum 4.466 -12.724 -1.576 13.576 Atomic orbital electron populations 1.70087 1.07834 1.28046 1.51457 1.25943 0.95752 1.03406 0.94566 0.85334 0.78535 0.78010 0.78438 1.19760 1.20887 1.18773 1.21541 0.93918 0.91297 1.50672 0.91458 1.19196 0.90590 0.88694 0.93404 1.60519 1.20585 1.01187 1.49173 1.22585 0.95961 0.89654 1.00897 1.21975 0.89447 0.95055 0.83675 1.86377 1.66219 1.43667 1.40311 1.22550 0.97738 0.90026 1.05002 1.24239 0.96902 1.00057 0.98700 1.87530 1.66201 1.06305 1.50265 1.24739 1.03046 0.94972 1.01110 0.92606 1.01890 0.98110 0.84617 0.91285 0.94754 0.75743 0.87884 0.88028 0.85711 0.88658 0.88635 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.62 9.32 25.60 0.24 -29.38 16 8 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 10.76 5.44 85.56 0.47 11.23 16 10 N -0.68 -26.86 6.01 -517.93 -3.11 -29.97 16 11 C 0.04 1.31 4.78 86.30 0.41 1.73 16 12 C 0.14 3.69 0.91 -10.07 -0.01 3.69 16 13 O -0.56 -15.65 12.86 -148.98 -1.92 -17.56 16 14 C -0.11 -2.40 5.46 31.62 0.17 -2.23 16 15 C -0.05 -1.00 7.27 72.71 0.53 -0.48 16 16 S -0.33 -8.26 23.26 -56.49 -1.31 -9.57 16 17 C -0.09 -2.32 5.29 72.41 0.38 -1.93 16 18 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 19 H -0.04 -2.03 8.14 -2.39 -0.02 -2.05 16 20 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 21 H 0.34 12.37 7.36 -89.69 -0.66 11.71 16 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 24 H 0.39 10.56 8.58 -74.06 -0.64 9.93 16 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.10 1.93 8.11 -2.39 -0.02 1.91 16 27 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.10 2.49 7.71 -2.39 -0.02 2.47 16 30 H 0.10 2.65 8.04 -2.39 -0.02 2.63 16 Total: -1.00 -62.23 263.09 -1.54 -63.76 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.16 Total: 20.04 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 2.65 Total: -16.82 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -2.83 Total: -85.27 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -1.92 Total: -17.56 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.31 Total: -9.57 kcal Total: -62.23 -1.54 -63.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705285945.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.903 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds