Wall clock time and date at job start Mon Mar 30 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 S 1.81402 * 109.47044 * 120.00143 * 2 1 3 5 5 O 1.42102 * 109.46725 * 284.58872 * 4 2 1 6 6 N 1.65602 * 103.00054 * 175.53323 * 4 2 1 7 7 C 1.36936 * 120.00298 * 168.12485 * 6 4 2 8 8 H 1.07997 * 120.00278 * 214.26047 * 7 6 4 9 9 C 1.38813 * 119.99660 * 34.25994 * 7 6 4 10 10 N 1.31620 * 120.00198 * 5.60993 * 9 7 6 11 11 Si 1.86794 * 119.99957 * 185.60830 * 9 7 6 12 12 H 1.48503 * 109.47064 * 270.00157 * 11 9 7 13 13 H 1.48498 * 109.47180 * 29.99751 * 11 9 7 14 14 H 1.48493 * 109.47391 * 150.00119 * 11 9 7 15 15 C 1.46501 * 119.99792 * 348.12896 * 6 4 2 16 16 C 1.53002 * 117.49882 * 192.68958 * 15 6 4 17 17 C 1.52991 * 60.00103 * 252.50971 * 16 15 6 18 18 H 1.09003 * 109.47091 * 300.00350 * 1 2 3 19 19 H 1.08997 * 109.46990 * 59.99701 * 1 2 3 20 20 H 1.08994 * 109.47656 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47091 * 239.99650 * 2 1 3 22 22 H 1.08998 * 109.47137 * 306.02629 * 3 2 1 23 23 H 1.09000 * 109.47495 * 66.03132 * 3 2 1 24 24 H 1.09003 * 109.46699 * 186.02806 * 3 2 1 25 25 H 0.97000 * 120.00465 * 174.99617 * 10 9 7 26 26 H 1.08996 * 115.55331 * 338.39389 * 15 6 4 27 27 H 1.09006 * 117.49752 * 0.02562 * 16 15 6 28 28 H 1.08996 * 117.50200 * 145.01460 * 16 15 6 29 29 H 1.09006 * 117.50107 * 252.50705 * 17 16 15 30 30 H 1.09002 * 117.52336 * 107.48285 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 1.4811 5 8 1.9743 -0.0118 2.6135 6 7 3.7755 -0.8715 1.2581 7 6 4.6034 -1.2233 2.2906 8 1 5.5700 -0.7524 2.3921 9 6 4.2001 -2.1850 3.2067 10 7 3.0722 -2.8378 3.0222 11 14 5.2583 -2.5529 4.7014 12 1 6.2249 -3.6305 4.3705 13 1 5.9989 -1.3281 5.0972 14 1 4.3924 -2.9925 5.8249 15 6 4.3413 -0.5096 -0.0438 16 6 5.8193 -0.8242 -0.2838 17 6 5.3691 0.6233 -0.0771 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.5913 1.9865 -0.8311 23 1 1.7675 1.9242 0.9390 24 1 3.1247 1.4443 -0.1079 25 1 2.8258 -3.5595 3.6216 26 1 3.6632 -0.5990 -0.8925 27 1 6.3705 -1.3008 0.5268 28 1 6.1137 -1.1209 -1.2905 29 1 5.3673 1.2791 -0.9478 30 1 5.6239 1.0998 0.8696 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706831231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:47 Heat of formation + Delta-G solvation = -13.609695 kcal Electronic energy + Delta-G solvation = -13661.754915 eV Core-core repulsion = 11391.596892 eV Total energy + Delta-G solvation = -2270.158023 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.14415 -34.09929 -33.96488 -32.91995 -30.15754 -26.65503 -24.73258 -21.59599 -21.12972 -20.14359 -18.10048 -16.14371 -15.66966 -14.77437 -14.19807 -13.97487 -13.51425 -13.23552 -12.66340 -12.28013 -11.78462 -11.63845 -11.30070 -11.15306 -10.97584 -10.78478 -10.70334 -10.56182 -10.30668 -10.16532 -9.99228 -9.62531 -8.90404 -8.68702 -7.66101 -6.63521 -5.98565 -3.81887 3.19845 3.32464 3.35241 3.50533 4.06574 4.38275 4.73748 5.18806 5.40582 5.65357 5.69190 5.74056 5.86824 5.93034 6.00034 6.15301 6.28990 6.33118 6.37311 6.45018 6.61263 6.73319 6.76661 6.89634 6.99848 7.54500 7.63152 8.49145 9.17754 9.62033 10.85024 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.014637 C = 0.011057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.812878 B = 1912.545027 C = 2531.837332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.519 4.519 3 C -0.136 4.136 4 S 1.573 4.427 5 O -0.909 6.909 6 N -0.728 5.728 7 C -0.257 4.257 8 H 0.070 0.930 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.933 3.067 12 H -0.279 1.279 13 H -0.275 1.275 14 H -0.283 1.283 15 C 0.104 3.896 16 C -0.183 4.183 17 C -0.222 4.222 18 H 0.047 0.953 19 H 0.043 0.957 20 H 0.059 0.941 21 H 0.096 0.904 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.279 0.721 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -0.187 -7.064 7.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.626 4.626 3 C -0.194 4.194 4 S 1.669 4.331 5 O -0.892 6.892 6 N -0.550 5.550 7 C -0.391 4.391 8 H 0.088 0.912 9 C -0.180 4.180 10 N -0.569 5.569 11 Si 0.761 3.239 12 H -0.205 1.205 13 H -0.200 1.200 14 H -0.208 1.208 15 C -0.007 4.007 16 C -0.222 4.222 17 C -0.262 4.262 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.114 0.886 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.757 -0.532 -6.135 6.404 hybrid contribution 1.373 1.859 0.425 2.350 sum -0.384 1.327 -5.710 5.875 Atomic orbital electron populations 1.21235 0.93810 1.01303 1.00830 1.28968 1.02447 1.06076 1.25122 1.21733 1.01511 0.95531 1.00627 1.72539 0.80607 1.01766 0.78146 1.92727 1.81678 1.68279 1.46515 1.50303 1.18413 1.76273 1.10058 1.19009 1.00466 1.17071 1.02512 0.91229 1.25302 0.97724 0.94994 0.99990 1.68770 1.23340 1.24525 1.40281 0.85784 0.78987 0.78332 0.80792 1.20529 1.20032 1.20828 1.21507 0.90224 0.99536 0.89411 1.23088 0.99724 0.97894 1.01505 1.23331 1.09157 0.91987 1.01763 0.93408 0.93795 0.92225 0.88571 0.94778 0.93253 0.91725 0.90890 0.87281 0.87963 0.90145 0.90342 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.20 37.16 0.34 -1.53 16 2 C -0.52 -9.85 2.61 -26.73 -0.07 -9.92 16 3 C -0.14 -2.69 8.86 37.16 0.33 -2.37 16 4 S 1.57 37.24 10.72 -107.50 -1.15 36.09 16 5 O -0.91 -26.81 17.07 -35.23 -0.60 -27.42 16 6 N -0.73 -17.87 3.21 -53.43 -0.17 -18.04 16 7 C -0.26 -6.94 8.02 -15.06 -0.12 -7.07 16 8 H 0.07 1.87 7.04 -52.49 -0.37 1.50 16 9 C 0.02 0.52 5.26 -17.43 -0.09 0.43 16 10 N -0.92 -24.74 11.24 55.49 0.62 -24.11 16 11 Si 0.93 21.66 29.56 -169.99 -5.02 16.63 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.10 2.13 4.40 -67.93 -0.30 1.83 16 16 C -0.18 -3.40 9.78 -26.74 -0.26 -3.66 16 17 C -0.22 -4.21 8.77 -26.74 -0.23 -4.45 16 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.10 1.62 6.47 -51.92 -0.34 1.28 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.09 7.71 -51.93 -0.40 0.69 16 24 H 0.06 1.28 4.80 -51.93 -0.25 1.03 16 25 H 0.28 7.07 8.32 -40.82 -0.34 6.74 16 26 H 0.11 1.95 5.80 -51.93 -0.30 1.65 16 27 H 0.10 2.08 6.82 -51.93 -0.35 1.72 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -31.80 253.96 -7.01 -38.81 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.10 Total: 0.94 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -0.41 Total: -26.73 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.45 Total: -42.15 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.60 Total: -27.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -1.15 Total: 36.09 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.80 -7.01 -38.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706831231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.198 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds