Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47530 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 299.99943 * 3 2 1 6 6 H 1.48502 * 109.47619 * 60.00189 * 3 2 1 7 7 C 1.38638 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99746 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.42901 * 117.00396 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47043 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.78842 * 305.49359 * 12 11 10 14 14 C 1.53249 * 109.63079 * 184.99839 * 12 11 10 15 15 N 1.46468 * 109.79284 * 178.25138 * 14 12 11 16 16 C 1.46473 * 112.55712 * 72.70079 * 15 14 12 17 17 C 1.53247 * 109.85682 * 287.33770 * 16 15 14 18 18 S 1.81900 * 108.50621 * 62.00647 * 17 16 15 19 19 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46825 * 59.99645 * 10 9 7 21 21 H 1.08998 * 109.46926 * 300.00683 * 10 9 7 22 22 H 1.09000 * 109.47532 * 60.00045 * 11 10 9 23 23 H 1.09003 * 109.47016 * 299.99973 * 11 10 9 24 24 H 1.09002 * 109.40649 * 58.17237 * 14 12 11 25 25 H 1.08997 * 109.40556 * 298.33358 * 14 12 11 26 26 H 1.00893 * 111.00223 * 307.58875 * 15 14 12 27 27 H 1.08991 * 109.41055 * 47.46293 * 16 15 14 28 28 H 1.09007 * 109.40043 * 167.22256 * 16 15 14 29 29 H 1.09002 * 109.63122 * 181.71086 * 17 16 15 30 30 H 1.09000 * 109.63419 * 302.10136 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0017 11 6 1.1806 -4.7809 -0.0021 12 6 2.0139 -6.0642 -0.0027 13 1 2.7143 -6.0490 -0.8378 14 6 1.0884 -7.2790 -0.1289 15 7 1.8852 -8.5073 -0.1718 16 6 2.4648 -8.8467 1.1299 17 6 3.6087 -7.8811 1.4580 18 16 2.9302 -6.1967 1.5632 19 1 -0.4850 0.8400 0.0004 20 1 2.7422 -3.5929 0.8878 21 1 2.7408 -3.5920 -0.8921 22 1 0.5514 -4.7555 -0.8918 23 1 0.5522 -4.7567 0.8881 24 1 0.5031 -7.1949 -1.0447 25 1 0.4163 -7.3130 0.7285 26 1 2.5996 -8.4503 -0.8819 27 1 1.6962 -8.7724 1.8991 28 1 2.8488 -9.8664 1.1004 29 1 4.0570 -8.1556 2.4129 30 1 4.3632 -7.9268 0.6727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720002546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -42.714016 kcal Electronic energy + Delta-G solvation = -12618.477065 eV Core-core repulsion = 10347.056984 eV Total energy + Delta-G solvation = -2271.420082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.88462 -36.36032 -33.66070 -31.56771 -29.90973 -27.08864 -24.44340 -22.92326 -21.95755 -20.98416 -17.55817 -17.27662 -15.62117 -15.32870 -14.99498 -14.57557 -14.48066 -13.91687 -13.76187 -13.32114 -12.78867 -12.40867 -11.86965 -11.70861 -11.45554 -11.22681 -10.87777 -10.70227 -10.57159 -10.13131 -10.00701 -9.39835 -9.12678 -8.79170 -7.94200 -7.54265 -5.92328 -3.55705 1.69450 2.52668 3.32870 3.35991 3.40734 3.94231 4.31126 4.57094 4.66651 4.88383 5.00188 5.16900 5.17768 5.39209 5.43120 5.51915 5.65985 5.79249 5.87647 5.96777 6.30669 6.58956 6.71455 6.76098 6.78474 7.03478 7.51829 8.46342 9.51313 10.19861 11.29151 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.069305 B = 0.005809 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.914981 B = 4818.678092 C = 5068.333039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.022 3.978 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.358 4.358 8 H 0.062 0.938 9 O -0.297 6.297 10 C 0.074 3.926 11 C -0.094 4.094 12 C -0.080 4.080 13 H 0.087 0.913 14 C 0.062 3.938 15 N -0.692 5.692 16 C 0.058 3.942 17 C -0.134 4.134 18 S -0.247 6.247 19 H 0.257 0.743 20 H 0.031 0.969 21 H 0.020 0.980 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.343 0.657 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -16.572 0.636 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.437 4.437 8 H 0.080 0.920 9 O -0.212 6.212 10 C -0.004 4.004 11 C -0.133 4.133 12 C -0.211 4.211 13 H 0.105 0.895 14 C -0.069 4.069 15 N -0.321 5.321 16 C -0.073 4.073 17 C -0.284 4.284 18 S -0.021 6.021 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.038 0.962 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.161 0.839 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.703 -16.128 1.554 16.871 hybrid contribution 1.491 0.681 -0.866 1.854 sum 6.194 -15.447 0.689 16.657 Atomic orbital electron populations 1.70032 1.05404 1.25761 1.52154 1.24955 0.95675 0.97728 0.99266 0.85893 0.78839 0.82327 0.77720 1.19925 1.20874 1.20839 1.20854 0.90216 0.82680 1.49957 0.92005 1.85597 1.31856 1.10464 1.93328 1.22085 0.93032 0.87071 0.98194 1.21248 0.97892 0.90265 1.03874 1.24070 1.00210 1.00587 0.96200 0.89481 1.22352 0.95260 0.85031 1.04303 1.60089 1.29184 1.35724 1.07067 1.22221 0.95261 0.97904 0.91901 1.24297 1.01585 0.96349 1.06202 1.87543 1.66640 1.18334 1.29536 0.93293 0.95123 0.96241 0.89945 0.90413 0.89127 0.89431 0.83892 0.89659 0.89832 0.87549 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.56 13.67 55.48 0.76 -27.80 16 2 C 0.02 0.66 5.49 -17.51 -0.10 0.56 16 3 Si 0.92 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.36 -10.93 9.89 30.88 0.31 -10.62 16 8 H 0.06 1.79 7.77 -52.48 -0.41 1.38 16 9 O -0.30 -8.84 9.78 -16.49 -0.16 -9.00 16 10 C 0.07 1.70 5.86 37.15 0.22 1.92 16 11 C -0.09 -1.69 5.06 -26.73 -0.14 -1.83 16 12 C -0.08 -1.12 2.67 -26.60 -0.07 -1.19 16 13 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.06 0.72 5.72 -3.93 -0.02 0.69 16 15 N -0.69 -6.99 6.70 -114.14 -0.76 -7.76 16 16 C 0.06 0.54 6.42 -3.93 -0.03 0.51 16 17 C -0.13 -1.36 6.59 37.29 0.25 -1.11 16 18 S -0.25 -3.63 20.65 -107.50 -2.22 -5.85 16 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 20 H 0.03 0.72 7.19 -51.93 -0.37 0.34 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 23 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 26 H 0.34 3.12 8.64 -39.30 -0.34 2.78 16 27 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 262.25 15.07 3.95 3.95 Total: -1.00 -33.85 262.25 -7.50 -41.35 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.46 Total: -1.40 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 0.42 Total: -11.08 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.01 Total: -35.56 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.16 Total: -9.00 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.22 Total: -5.85 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.85 -7.50 -41.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720002546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.367 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds