Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47530 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 299.99943 * 3 2 1 6 6 H 1.48502 * 109.47619 * 60.00189 * 3 2 1 7 7 C 1.38638 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99746 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.42901 * 117.00396 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47043 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.78842 * 305.49359 * 12 11 10 14 14 C 1.53249 * 109.63079 * 184.99839 * 12 11 10 15 15 N 1.46468 * 109.79284 * 178.25138 * 14 12 11 16 16 C 1.46473 * 112.55712 * 72.70079 * 15 14 12 17 17 C 1.53247 * 109.85682 * 287.33770 * 16 15 14 18 18 S 1.81900 * 108.50621 * 62.00647 * 17 16 15 19 19 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46825 * 59.99645 * 10 9 7 21 21 H 1.08998 * 109.46926 * 300.00683 * 10 9 7 22 22 H 1.09000 * 109.47532 * 60.00045 * 11 10 9 23 23 H 1.09003 * 109.47016 * 299.99973 * 11 10 9 24 24 H 1.09002 * 109.40649 * 58.17237 * 14 12 11 25 25 H 1.08997 * 109.40556 * 298.33358 * 14 12 11 26 26 H 1.00893 * 111.00223 * 307.58875 * 15 14 12 27 27 H 1.08991 * 109.41055 * 47.46293 * 16 15 14 28 28 H 1.09007 * 109.40043 * 167.22256 * 16 15 14 29 29 H 1.09002 * 109.63122 * 181.71086 * 17 16 15 30 30 H 1.09000 * 109.63419 * 302.10136 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0017 11 6 1.1806 -4.7809 -0.0021 12 6 2.0139 -6.0642 -0.0027 13 1 2.7143 -6.0490 -0.8378 14 6 1.0884 -7.2790 -0.1289 15 7 1.8852 -8.5073 -0.1718 16 6 2.4648 -8.8467 1.1299 17 6 3.6087 -7.8811 1.4580 18 16 2.9302 -6.1967 1.5632 19 1 -0.4850 0.8400 0.0004 20 1 2.7422 -3.5929 0.8878 21 1 2.7408 -3.5920 -0.8921 22 1 0.5514 -4.7555 -0.8918 23 1 0.5522 -4.7567 0.8881 24 1 0.5031 -7.1949 -1.0447 25 1 0.4163 -7.3130 0.7285 26 1 2.5996 -8.4503 -0.8819 27 1 1.6962 -8.7724 1.8991 28 1 2.8488 -9.8664 1.1004 29 1 4.0570 -8.1556 2.4129 30 1 4.3632 -7.9268 0.6727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720002546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -67.751393 kcal Electronic energy + Delta-G solvation = -12619.562767 eV Core-core repulsion = 10347.056984 eV Total energy + Delta-G solvation = -2272.505784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98547 -38.23181 -35.11723 -33.69881 -30.98697 -28.44114 -26.53864 -24.17609 -22.89819 -22.45672 -19.69259 -18.40451 -17.48566 -16.82748 -16.02639 -15.94308 -15.73540 -15.36221 -15.04535 -14.78064 -14.39543 -13.70317 -13.43434 -13.08384 -12.75682 -12.69602 -12.57603 -12.34635 -12.04267 -11.61803 -11.50652 -11.32298 -10.92523 -10.19257 -9.72211 -8.67846 -8.21886 -5.92524 0.64285 1.37603 1.43868 1.51966 1.54795 2.30223 3.08396 3.11092 3.39357 3.75313 3.84465 3.95931 4.11176 4.23404 4.30106 4.46027 4.52323 4.55809 4.71199 4.76190 4.91548 4.95651 5.03681 5.08814 5.24083 5.86716 6.17716 6.29408 7.20655 7.99758 9.03349 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.069305 B = 0.005809 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.914981 B = 4818.678092 C = 5068.333039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.008 2.992 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.383 4.383 8 H 0.069 0.931 9 O -0.338 6.338 10 C 0.072 3.928 11 C -0.084 4.084 12 C -0.060 4.060 13 H 0.094 0.906 14 C 0.070 3.930 15 N -0.688 5.688 16 C 0.060 3.940 17 C -0.110 4.110 18 S -0.323 6.323 19 H 0.263 0.737 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.351 0.649 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -17.515 0.243 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.234 4.234 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.086 0.914 9 O -0.254 6.254 10 C -0.005 4.005 11 C -0.123 4.123 12 C -0.191 4.191 13 H 0.113 0.887 14 C -0.061 4.061 15 N -0.317 5.317 16 C -0.071 4.071 17 C -0.260 4.260 18 S -0.097 6.097 19 H 0.071 0.929 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.171 0.829 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.999 -17.109 1.156 18.167 hybrid contribution 1.128 0.847 -0.722 1.585 sum 7.126 -16.262 0.433 17.760 Atomic orbital electron populations 1.70195 1.07592 1.27352 1.53181 1.26273 0.96830 1.02063 0.98233 0.84670 0.77905 0.76234 0.78231 1.18283 1.19642 1.19885 1.21353 0.90763 0.83620 1.50401 0.91381 1.85531 1.34261 1.12040 1.93591 1.22325 0.93841 0.86437 0.97905 1.21142 0.97473 0.90335 1.03315 1.23934 1.00060 0.99409 0.95667 0.88736 1.22254 0.94866 0.84507 1.04503 1.60119 1.29613 1.34137 1.07827 1.22291 0.94692 0.98890 0.91206 1.24372 1.01862 0.92203 1.07539 1.87782 1.67650 1.23565 1.30730 0.92870 0.95818 0.95734 0.89565 0.91921 0.88082 0.90143 0.82905 0.90375 0.86924 0.86076 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.31 13.67 21.61 0.30 -61.02 16 2 C -0.04 -2.49 5.49 84.83 0.47 -2.02 16 3 Si 1.01 46.36 29.55 68.60 2.03 48.39 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.38 -23.82 9.89 67.92 0.67 -23.14 16 8 H 0.07 3.99 7.77 -2.91 -0.02 3.97 16 9 O -0.34 -20.79 9.78 -81.92 -0.80 -21.59 16 10 C 0.07 3.40 5.86 71.98 0.42 3.82 16 11 C -0.08 -3.08 5.06 30.59 0.15 -2.93 16 12 C -0.06 -1.65 2.67 30.68 0.08 -1.57 16 13 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 14 C 0.07 1.52 5.72 86.47 0.49 2.01 16 15 N -0.69 -12.00 6.70 -515.03 -3.45 -15.45 16 16 C 0.06 0.93 6.42 86.47 0.56 1.48 16 17 C -0.11 -1.95 6.59 72.06 0.47 -1.48 16 18 S -0.32 -9.38 20.65 -56.49 -1.17 -10.54 16 19 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 20 H 0.02 1.14 7.19 -2.39 -0.02 1.13 16 21 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 23 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 1.88 7.91 -2.39 -0.02 1.86 16 26 H 0.35 5.27 8.64 -89.70 -0.78 4.50 16 27 H 0.08 1.37 7.91 -2.39 -0.02 1.35 16 28 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.37 262.25 0.57 -73.81 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.34 Total: 10.23 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 3.32 Total: -23.83 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.16 Total: -76.47 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.80 Total: -21.59 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.17 Total: -10.54 kcal Total: -74.37 0.57 -73.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720002546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.057 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds