Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00253 * 2 1 4 4 H 1.48488 * 109.47656 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46799 * 300.00138 * 3 2 1 6 6 H 1.48499 * 109.47003 * 59.99918 * 3 2 1 7 7 C 1.40049 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.46384 * 119.99777 * 0.02562 * 7 2 1 10 10 O 1.21681 * 119.99870 * 5.00831 * 9 7 2 11 11 N 1.34771 * 120.00012 * 185.00409 * 9 7 2 12 12 C 1.46925 * 120.63136 * 174.76166 * 11 9 7 13 13 C 1.53192 * 108.77732 * 126.41469 * 12 11 9 14 14 C 1.53045 * 109.31031 * 54.63379 * 13 12 11 15 15 H 1.09003 * 109.46062 * 58.66058 * 14 13 12 16 16 O 1.42903 * 109.44842 * 178.61874 * 14 13 12 17 17 C 1.53036 * 109.53860 * 298.63677 * 14 13 12 18 18 H 1.08997 * 109.49858 * 301.40804 * 17 14 13 19 19 F 1.39907 * 109.49615 * 181.34929 * 17 14 13 20 20 C 1.46996 * 120.61456 * 354.78479 * 11 9 7 21 21 H 0.96995 * 120.00039 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.58509 * 6.62436 * 12 11 9 23 23 H 1.08999 * 109.70395 * 246.27385 * 12 11 9 24 24 H 1.08998 * 109.50028 * 294.68849 * 13 12 11 25 25 H 1.08993 * 109.52422 * 174.59684 * 13 12 11 26 26 H 0.96702 * 114.00244 * 300.06585 * 16 14 13 27 27 H 1.09002 * 109.58078 * 113.80343 * 20 11 9 28 28 H 1.09003 * 109.63284 * 353.35907 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0618 -2.4826 -0.0919 11 7 1.9451 -3.6455 0.1029 12 6 1.2203 -4.9181 0.2195 13 6 1.7221 -5.8729 -0.8684 14 6 3.2433 -6.0040 -0.7642 15 1 3.5089 -6.3755 0.2256 16 8 3.7111 -6.9190 -1.7572 17 6 3.8914 -4.6355 -0.9861 18 1 3.6063 -4.2525 -1.9659 19 9 5.2832 -4.7620 -0.9212 20 6 3.4149 -3.6664 0.1004 21 1 -0.4850 0.8400 -0.0004 22 1 0.1524 -4.7438 0.0885 23 1 1.4012 -5.3555 1.2014 24 1 1.4573 -5.4782 -1.8493 25 1 1.2625 -6.8520 -0.7340 26 1 3.3409 -7.8088 -1.6778 27 1 3.7771 -4.0006 1.0726 28 1 3.7950 -2.6666 -0.1095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885493972.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -138.425719 kcal Electronic energy + Delta-G solvation = -15132.226469 eV Core-core repulsion = 12290.442841 eV Total energy + Delta-G solvation = -2841.783628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.28098 -38.74945 -36.89723 -34.73556 -32.60902 -30.99567 -29.80038 -26.46685 -24.09737 -22.73142 -20.83737 -19.13590 -17.40150 -16.91441 -15.88483 -15.52347 -15.29381 -14.90114 -14.33542 -14.10097 -13.62502 -13.18055 -12.89959 -12.66369 -12.02268 -11.81264 -11.37007 -11.16641 -11.07522 -10.96774 -10.64758 -10.46282 -10.25473 -9.93227 -9.85000 -8.94498 -7.71668 -7.46732 -6.29422 -4.75493 3.08781 3.17690 3.21841 3.98612 4.09891 4.28447 4.47278 4.74658 4.87110 5.09439 5.16148 5.43056 5.59132 5.65533 5.80591 5.94866 6.05257 6.14192 6.33460 6.40242 6.55848 7.36601 7.40563 7.61323 7.98833 8.20350 8.92840 9.25141 10.44919 10.63918 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041324 B = 0.009176 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.407338 B = 3050.782994 C = 3592.146553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.559 3.441 10 O -0.573 6.573 11 N -0.641 5.641 12 C 0.118 3.882 13 C -0.162 4.162 14 C 0.083 3.917 15 H 0.063 0.937 16 O -0.564 6.564 17 C 0.085 3.915 18 H 0.090 0.910 19 F -0.210 7.210 20 C 0.104 3.896 21 H 0.269 0.731 22 H 0.092 0.908 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.376 0.624 27 H 0.058 0.942 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -8.647 -0.125 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.365 3.635 10 O -0.455 6.455 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.201 4.201 14 C 0.024 3.976 15 H 0.081 0.919 16 O -0.369 6.369 17 C 0.047 3.953 18 H 0.108 0.892 19 F -0.191 7.191 20 C -0.021 4.021 21 H 0.080 0.920 22 H 0.111 0.889 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.223 0.777 27 H 0.076 0.924 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.366 -7.988 -0.359 9.630 hybrid contribution 0.271 0.159 0.184 0.364 sum 5.637 -7.829 -0.176 9.649 Atomic orbital electron populations 1.70010 1.07127 1.27449 1.34832 1.25733 0.94644 1.00427 0.92431 0.86301 0.80572 0.81565 0.78324 1.18601 1.20054 1.20065 1.21025 0.93668 0.89162 1.54283 0.90728 1.18299 0.86957 0.82036 0.76182 1.90599 1.14250 1.85826 1.54819 1.48229 1.03715 1.06330 1.79732 1.21154 0.99249 0.84626 0.95603 1.22649 0.94712 1.00633 1.02087 1.22409 0.93775 0.89871 0.91531 0.91914 1.86548 1.71580 1.23940 1.54858 1.22145 0.75177 0.95040 1.02922 0.89195 1.92778 1.31352 1.97034 1.97907 1.21944 0.83612 1.00563 0.96010 0.91973 0.88943 0.93475 0.90596 0.90929 0.77718 0.92427 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.42 11.84 55.55 0.66 -21.76 15 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 15 3 Si 0.91 19.67 29.56 -169.99 -5.02 14.65 15 4 H -0.26 -5.48 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.55 -14.90 8.86 -35.63 -0.32 -15.22 15 8 H 0.07 1.86 5.69 -52.49 -0.30 1.56 15 9 C 0.56 15.47 7.62 -12.99 -0.10 15.37 15 10 O -0.57 -18.03 14.45 5.21 0.08 -17.95 15 11 N -0.64 -14.11 2.97 -174.38 -0.52 -14.63 15 12 C 0.12 2.17 6.44 -3.71 -0.02 2.15 15 13 C -0.16 -2.41 5.70 -26.61 -0.15 -2.56 15 14 C 0.08 1.23 3.19 -26.69 -0.09 1.15 15 15 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 16 O -0.56 -7.86 13.25 -35.23 -0.47 -8.33 15 17 C 0.08 1.46 3.70 -26.62 -0.10 1.36 15 18 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 19 F -0.21 -3.72 17.01 2.25 0.04 -3.68 15 20 C 0.10 1.95 6.06 -3.67 -0.02 1.92 15 21 H 0.27 7.13 8.29 -40.82 -0.34 6.79 15 22 H 0.09 1.91 6.99 -51.93 -0.36 1.55 15 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.38 3.33 9.08 45.56 0.41 3.74 15 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 28 H 0.11 2.17 5.38 -51.93 -0.28 1.89 15 LS Contribution 241.75 15.07 3.64 3.64 Total: -1.00 -33.58 241.75 -4.68 -38.27 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -2.20 Total: 3.33 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.89 Total: 6.47 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.14 Total: -36.39 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.39 Total: -26.28 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.58 -4.68 -38.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885493972.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.157 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds