Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00253 * 2 1 4 4 H 1.48488 * 109.47656 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46799 * 300.00138 * 3 2 1 6 6 H 1.48499 * 109.47003 * 59.99918 * 3 2 1 7 7 C 1.40049 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.46384 * 119.99777 * 0.02562 * 7 2 1 10 10 O 1.21681 * 119.99870 * 5.00831 * 9 7 2 11 11 N 1.34771 * 120.00012 * 185.00409 * 9 7 2 12 12 C 1.46925 * 120.63136 * 174.76166 * 11 9 7 13 13 C 1.53192 * 108.77732 * 126.41469 * 12 11 9 14 14 C 1.53045 * 109.31031 * 54.63379 * 13 12 11 15 15 H 1.09003 * 109.46062 * 58.66058 * 14 13 12 16 16 O 1.42903 * 109.44842 * 178.61874 * 14 13 12 17 17 C 1.53036 * 109.53860 * 298.63677 * 14 13 12 18 18 H 1.08997 * 109.49858 * 301.40804 * 17 14 13 19 19 F 1.39907 * 109.49615 * 181.34929 * 17 14 13 20 20 C 1.46996 * 120.61456 * 354.78479 * 11 9 7 21 21 H 0.96995 * 120.00039 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.58509 * 6.62436 * 12 11 9 23 23 H 1.08999 * 109.70395 * 246.27385 * 12 11 9 24 24 H 1.08998 * 109.50028 * 294.68849 * 13 12 11 25 25 H 1.08993 * 109.52422 * 174.59684 * 13 12 11 26 26 H 0.96702 * 114.00244 * 300.06585 * 16 14 13 27 27 H 1.09002 * 109.58078 * 113.80343 * 20 11 9 28 28 H 1.09003 * 109.63284 * 353.35907 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0618 -2.4826 -0.0919 11 7 1.9451 -3.6455 0.1029 12 6 1.2203 -4.9181 0.2195 13 6 1.7221 -5.8729 -0.8684 14 6 3.2433 -6.0040 -0.7642 15 1 3.5089 -6.3755 0.2256 16 8 3.7111 -6.9190 -1.7572 17 6 3.8914 -4.6355 -0.9861 18 1 3.6063 -4.2525 -1.9659 19 9 5.2832 -4.7620 -0.9212 20 6 3.4149 -3.6664 0.1004 21 1 -0.4850 0.8400 -0.0004 22 1 0.1524 -4.7438 0.0885 23 1 1.4012 -5.3555 1.2014 24 1 1.4573 -5.4782 -1.8493 25 1 1.2625 -6.8520 -0.7340 26 1 3.3409 -7.8088 -1.6778 27 1 3.7771 -4.0006 1.0726 28 1 3.7950 -2.6666 -0.1095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885493972.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -164.948474 kcal Electronic energy + Delta-G solvation = -15133.376582 eV Core-core repulsion = 12290.442841 eV Total energy + Delta-G solvation = -2842.933741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.67369 -40.35825 -38.43245 -36.38081 -34.69105 -32.48394 -31.29766 -28.46789 -25.62780 -24.19608 -22.38059 -20.82530 -18.79140 -18.51051 -17.74684 -16.93331 -16.85569 -16.43000 -16.03313 -15.66366 -15.10675 -14.67468 -14.32212 -14.29148 -13.59771 -13.53659 -13.08298 -12.83966 -12.66337 -12.49975 -12.29972 -12.06974 -11.96899 -11.36301 -11.00270 -10.96944 -9.84697 -9.26997 -8.33113 -6.88812 1.39118 1.40596 1.57752 2.21285 2.39735 2.62352 2.98449 3.45397 3.49210 3.65193 3.79131 3.86845 4.12502 4.29017 4.54041 4.60719 4.67018 4.75925 4.88067 4.93425 5.21873 5.35223 5.65805 6.06160 6.29064 6.81671 6.84680 7.28449 8.39398 8.62373 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041324 B = 0.009176 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.407338 B = 3050.782994 C = 3592.146553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.542 3.458 10 O -0.625 6.625 11 N -0.644 5.644 12 C 0.112 3.888 13 C -0.148 4.148 14 C 0.094 3.906 15 H 0.086 0.914 16 O -0.575 6.575 17 C 0.086 3.914 18 H 0.074 0.926 19 F -0.211 7.211 20 C 0.105 3.895 21 H 0.275 0.725 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.115 0.885 26 H 0.400 0.600 27 H 0.082 0.918 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -9.440 0.209 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.607 4.607 8 H 0.112 0.888 9 C 0.349 3.651 10 O -0.512 6.512 11 N -0.381 5.381 12 C -0.011 4.011 13 C -0.187 4.187 14 C 0.035 3.965 15 H 0.104 0.896 16 O -0.384 6.384 17 C 0.049 3.951 18 H 0.092 0.908 19 F -0.192 7.192 20 C -0.020 4.020 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.251 0.749 27 H 0.100 0.900 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.283 -8.857 -0.024 11.467 hybrid contribution -0.298 0.287 0.075 0.420 sum 6.985 -8.570 0.050 11.056 Atomic orbital electron populations 1.70169 1.09500 1.29013 1.36245 1.26953 0.95484 1.04877 0.91119 0.85018 0.79484 0.75589 0.78571 1.16917 1.19481 1.19208 1.21561 0.94843 0.89855 1.54451 0.88841 1.18628 0.86595 0.83988 0.75894 1.90549 1.16375 1.87163 1.57114 1.48013 1.05261 1.06271 1.78550 1.21363 0.97334 0.83876 0.98510 1.22538 0.95330 1.01489 0.99307 1.22206 0.92735 0.88768 0.92814 0.89582 1.86503 1.71802 1.25502 1.54619 1.22013 0.75197 0.96562 1.01356 0.90781 1.92776 1.31463 1.97095 1.97825 1.22003 0.81413 1.00662 0.97898 0.91471 0.92033 0.90676 0.92825 0.86674 0.74850 0.89998 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.49 11.84 21.84 0.26 -49.23 15 2 C 0.03 1.71 5.50 85.31 0.47 2.18 15 3 Si 0.99 40.34 29.56 68.60 2.03 42.37 15 4 H -0.25 -9.24 7.11 99.48 0.71 -8.53 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 7 C -0.57 -31.68 8.86 24.83 0.22 -31.46 15 8 H 0.09 4.65 5.69 -2.91 -0.02 4.63 15 9 C 0.54 30.91 7.62 86.36 0.66 31.57 15 10 O -0.63 -41.17 14.45 -4.29 -0.06 -41.23 15 11 N -0.64 -28.35 2.97 -823.83 -2.45 -30.80 15 12 C 0.11 4.04 6.44 86.36 0.56 4.59 15 13 C -0.15 -4.05 5.70 30.67 0.17 -3.88 15 14 C 0.09 2.47 3.19 30.62 0.10 2.57 15 15 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 16 O -0.58 -13.97 13.25 -148.98 -1.97 -15.94 15 17 C 0.09 2.81 3.70 30.67 0.11 2.93 15 18 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 19 F -0.21 -7.00 17.01 44.97 0.76 -6.23 15 20 C 0.10 3.78 6.06 86.35 0.52 4.30 15 21 H 0.28 15.01 8.29 -92.71 -0.77 14.24 15 22 H 0.06 2.60 6.99 -2.39 -0.02 2.59 15 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.40 5.33 9.08 -74.06 -0.67 4.65 15 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 28 H 0.10 3.72 5.38 -2.39 -0.01 3.71 15 Total: -1.00 -75.24 241.75 1.90 -73.35 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.52 Total: 14.90 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 2.81 Total: 12.81 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.19 Total: -80.03 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -2.04 Total: -57.17 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.76 Total: -6.23 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -75.24 1.90 -73.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885493972.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.601 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds