Wall clock time and date at job start Mon Mar 30 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 F 1.39905 * 109.46900 * 179.97438 * 16 15 13 18 18 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 21 21 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 22 22 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 23 23 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 24 24 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 25 25 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 26 26 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 27 27 H 1.09001 * 113.77016 * 221.05654 * 18 12 11 28 28 H 1.09005 * 113.86980 * 89.67729 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 9 -1.3046 -7.4647 3.6660 18 6 2.1615 -3.7405 -0.0011 19 1 -0.4850 0.8401 0.0004 20 1 -0.3764 -1.7802 -0.9678 21 1 1.3966 -2.5373 2.2104 22 1 -0.2731 -2.8605 1.5670 23 1 0.1879 -5.3004 3.3596 24 1 -1.0946 -5.3215 2.1255 25 1 -0.6840 -7.7370 1.7414 26 1 0.5985 -7.7151 2.9756 27 1 2.1758 -4.2745 -0.9513 28 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119568551.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:37 Heat of formation + Delta-G solvation = -110.829533 kcal Electronic energy + Delta-G solvation = -14709.796512 eV Core-core repulsion = 11869.209544 eV Total energy + Delta-G solvation = -2840.586968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.55502 -39.58082 -37.51222 -34.00899 -32.24900 -31.90510 -28.62371 -25.63081 -25.32307 -23.23180 -20.07126 -18.35487 -17.51463 -16.64026 -16.31857 -15.80725 -15.19473 -14.86821 -14.69303 -14.28182 -14.01720 -13.31992 -12.76212 -12.41995 -12.20475 -11.84991 -11.59752 -11.18008 -11.14506 -11.05660 -10.71887 -10.56482 -10.33929 -9.72313 -9.28964 -8.81665 -8.48490 -7.92547 -6.44044 -4.54421 3.07164 3.11566 3.20182 3.23294 3.41883 4.14892 4.68901 4.75980 4.82960 4.92174 5.17660 5.50145 5.60751 5.72160 5.89617 6.03097 6.13056 6.31664 6.44421 6.54725 6.61133 7.04132 7.58766 7.76945 8.38669 8.48858 8.61746 9.17012 9.40727 10.62756 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.054698 B = 0.006850 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.779575 B = 4086.513841 C = 4261.718431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.075 3.925 12 N -0.630 5.630 13 C 0.532 3.468 14 O -0.569 6.569 15 C -0.168 4.168 16 C 0.079 3.921 17 F -0.221 7.221 18 C 0.111 3.889 19 H 0.274 0.726 20 H 0.393 0.607 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -4.408 4.643 6.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.048 4.048 12 N -0.363 5.363 13 C 0.321 3.679 14 O -0.450 6.450 15 C -0.208 4.208 16 C 0.023 3.977 17 F -0.202 7.202 18 C -0.011 4.011 19 H 0.084 0.916 20 H 0.249 0.751 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.132 -5.524 4.290 6.995 hybrid contribution 0.023 1.519 0.374 1.565 sum -0.109 -4.005 4.664 6.148 Atomic orbital electron populations 1.69314 1.06211 1.28249 1.50122 1.25073 0.95022 0.99923 0.92992 0.86316 0.79833 0.81905 0.78385 1.20296 1.19529 1.20871 1.21514 0.93961 0.89955 1.52162 0.91004 1.19841 0.85462 0.91238 0.83787 1.86058 1.45199 1.50560 1.56753 1.24378 1.00144 0.77543 1.02715 1.50180 1.41782 1.04682 1.39661 1.19838 0.83119 0.81877 0.83074 1.90648 1.56851 1.40201 1.57313 1.22094 1.00855 0.97980 0.99921 1.21662 0.90789 0.95600 0.89618 1.92748 1.67089 1.96158 1.64248 1.23480 0.93794 0.92504 0.91275 0.91590 0.75126 0.89831 0.91231 0.88240 0.88012 0.89946 0.90062 0.91062 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.26 11.09 55.43 0.61 -21.65 15 2 C 0.07 1.76 5.40 -17.82 -0.10 1.67 15 3 Si 0.91 19.06 29.54 -169.99 -5.02 14.04 15 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.54 -13.17 8.62 -34.44 -0.30 -13.47 15 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 15 9 C 0.24 5.57 1.44 -90.84 -0.13 5.44 15 10 O -0.57 -14.46 13.48 -35.23 -0.48 -14.94 15 11 C 0.07 1.54 8.01 -2.97 -0.02 1.52 15 12 N -0.63 -12.88 3.61 -178.30 -0.64 -13.53 15 13 C 0.53 10.26 8.06 -10.99 -0.09 10.18 15 14 O -0.57 -12.41 16.71 5.55 0.09 -12.32 15 15 C -0.17 -2.51 5.90 -27.88 -0.16 -2.67 15 16 C 0.08 1.07 6.84 37.16 0.25 1.33 15 17 F -0.22 -3.15 17.36 2.25 0.04 -3.11 15 18 C 0.11 2.37 8.22 -2.97 -0.02 2.35 15 19 H 0.27 6.46 8.31 -40.82 -0.34 6.12 15 20 H 0.39 9.99 6.46 45.56 0.29 10.28 15 21 H 0.08 1.64 8.09 -51.93 -0.42 1.22 15 22 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 23 H 0.10 1.33 8.14 -51.93 -0.42 0.90 15 24 H 0.10 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.08 1.11 8.10 -51.92 -0.42 0.69 15 26 H 0.08 1.06 8.10 -51.93 -0.42 0.64 15 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.09 1.68 8.09 -51.93 -0.42 1.26 15 LS Contribution 253.12 15.07 3.81 3.81 Total: -1.00 -27.21 253.12 -4.77 -31.98 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -2.62 Total: 9.36 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.57 Total: 6.34 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.03 Total: -35.18 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.38 Total: -27.26 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.21 -4.77 -31.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119568551.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.849 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds