Wall clock time and date at job start Mon Mar 30 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47074 * 143.52501 * 3 2 1 5 5 C 1.36832 * 120.00244 * 263.70840 * 4 3 2 6 6 H 1.07998 * 119.99963 * 204.44405 * 5 4 3 7 7 C 1.38733 * 119.99847 * 24.44214 * 5 4 3 8 8 N 1.31632 * 120.00344 * 15.78877 * 7 5 4 9 9 Si 1.86802 * 120.00086 * 195.78745 * 7 5 4 10 10 H 1.48495 * 109.47237 * 89.99852 * 9 7 5 11 11 H 1.48502 * 109.47195 * 209.99887 * 9 7 5 12 12 H 1.48502 * 109.46896 * 329.99798 * 9 7 5 13 13 C 1.39413 * 119.99919 * 83.70210 * 4 3 2 14 14 C 1.39101 * 120.01328 * 0.02562 * 13 4 3 15 15 C 1.37966 * 119.98329 * 180.02562 * 14 13 4 16 16 C 1.38980 * 120.01343 * 0.02994 * 15 14 13 17 17 N 1.39782 * 119.98152 * 179.97438 * 16 15 14 18 18 C 1.38969 * 120.03178 * 0.24622 * 16 15 14 19 19 C 1.37968 * 120.01533 * 359.45178 * 18 16 15 20 20 H 1.09005 * 109.47529 * 23.52663 * 3 2 1 21 21 H 1.09000 * 109.47191 * 263.52360 * 3 2 1 22 22 H 0.97000 * 120.00575 * 180.02562 * 8 7 5 23 23 H 1.07996 * 120.00840 * 0.02562 * 14 13 4 24 24 H 1.07996 * 119.98968 * 179.97438 * 15 14 13 25 25 H 0.96998 * 119.99853 * 0.02562 * 17 16 15 26 26 H 0.96992 * 119.99448 * 179.71838 * 17 16 15 27 27 H 1.07996 * 119.99772 * 179.73446 * 18 16 15 28 28 H 1.07999 * 120.01042 * 180.25795 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0958 1.1115 -0.8211 5 6 3.4464 0.8954 -2.1260 6 1 4.1489 1.5556 -2.6128 7 6 2.8994 -0.1718 -2.8235 8 7 1.8314 -0.7844 -2.3580 9 14 3.6785 -0.7394 -4.4236 10 1 4.7032 -1.7747 -4.1353 11 1 2.6318 -1.3116 -5.3082 12 1 4.3197 0.4170 -5.0995 13 6 3.2027 2.3890 -0.2730 14 6 2.8467 2.6089 1.0536 15 6 2.9523 3.8734 1.5952 16 6 3.4135 4.9274 0.8154 17 7 3.5196 6.2084 1.3647 18 6 3.7638 4.7095 -0.5116 19 6 3.6647 3.4442 -1.0527 20 1 2.9718 -0.9414 -0.4102 21 1 2.9712 0.1167 1.0211 22 1 1.4492 -1.5308 -2.8455 23 1 2.4878 1.7901 1.6594 24 1 2.6755 4.0444 2.6250 25 1 3.2718 6.3614 2.2899 26 1 3.8454 6.9432 0.8219 27 1 4.1181 5.5297 -1.1182 28 1 3.9409 3.2741 -2.0829 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019266171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:58 Heat of formation + Delta-G solvation = 54.892782 kcal Electronic energy + Delta-G solvation = -13911.941343 eV Core-core repulsion = 11541.602609 eV Total energy + Delta-G solvation = -2370.338733 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31659 -38.15331 -36.43329 -34.68099 -33.04613 -31.64765 -29.38393 -28.23811 -25.28286 -23.30986 -21.85173 -19.38982 -18.59809 -18.02629 -17.17275 -17.02902 -16.12728 -15.64007 -15.18791 -14.38226 -14.29862 -14.13741 -13.84603 -13.71246 -13.41083 -12.99916 -12.84603 -12.68223 -12.43229 -12.12345 -11.98286 -11.78918 -11.25818 -10.74346 -9.66631 -9.54337 -8.23551 -7.61584 -5.59490 0.82855 1.16631 1.51066 1.53770 1.60294 2.10554 2.36501 2.46534 3.04799 3.38836 3.40548 3.50304 3.79126 4.29282 4.38826 4.67052 4.81767 4.93200 4.99309 5.16181 5.43258 5.53512 5.65838 5.76049 5.92798 6.12771 6.31417 6.85245 7.01533 7.16560 7.38550 7.55692 7.85730 8.84264 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032655 B = 0.009768 C = 0.007895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.250946 B = 2865.708299 C = 3545.576619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.264 3.736 3 C 0.242 3.758 4 N -0.486 5.486 5 C -0.306 4.306 6 H 0.096 0.904 7 C -0.020 4.020 8 N -0.916 5.916 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.299 1.299 12 H -0.266 1.266 13 C 0.148 3.852 14 C -0.189 4.189 15 C -0.148 4.148 16 C 0.125 3.875 17 N -0.881 5.881 18 C -0.149 4.149 19 C -0.174 4.174 20 H 0.110 0.890 21 H 0.116 0.884 22 H 0.262 0.738 23 H 0.117 0.883 24 H 0.132 0.868 25 H 0.399 0.601 26 H 0.399 0.601 27 H 0.127 0.873 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 7.399 5.765 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.054 4.054 3 C 0.114 3.886 4 N -0.183 5.183 5 C -0.434 4.434 6 H 0.114 0.886 7 C -0.219 4.219 8 N -0.556 5.556 9 Si 0.812 3.188 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.191 1.191 13 C 0.041 3.959 14 C -0.213 4.213 15 C -0.171 4.171 16 C 0.022 3.978 17 N -0.425 5.425 18 C -0.172 4.172 19 C -0.198 4.198 20 H 0.128 0.872 21 H 0.133 0.867 22 H 0.072 0.928 23 H 0.135 0.865 24 H 0.149 0.851 25 H 0.228 0.772 26 H 0.227 0.773 27 H 0.145 0.855 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.142 6.962 5.558 10.286 hybrid contribution 0.328 -0.330 -1.045 1.144 sum 5.470 6.632 4.513 9.709 Atomic orbital electron populations 1.80809 1.15212 1.10986 1.13913 1.30203 0.96184 0.90503 0.88479 1.18671 0.79811 0.93550 0.96569 1.42207 1.63318 1.03016 1.09759 1.19684 1.22450 1.13327 0.87985 0.88631 1.25915 0.95298 0.98776 1.01877 1.69958 1.20058 1.23875 1.41696 0.85003 0.77313 0.78625 0.77895 1.19613 1.22567 1.19090 1.18238 0.98747 0.85665 0.93241 1.20471 1.08868 0.97975 0.94010 1.20422 1.05240 0.91575 0.99818 1.17526 1.00955 0.86835 0.92525 1.42047 1.78472 1.06346 1.15649 1.20450 1.05905 0.96446 0.94361 1.20488 1.07453 0.92244 0.99645 0.87233 0.86688 0.92792 0.86522 0.85064 0.77209 0.77290 0.85465 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.30 18.54 20.01 0.37 -26.93 15 2 C 0.26 12.59 13.07 89.44 1.17 13.76 15 3 C 0.24 10.17 4.80 84.57 0.41 10.58 15 4 N -0.49 -22.43 2.70 -521.61 -1.41 -23.83 15 5 C -0.31 -15.06 8.96 84.03 0.75 -14.30 15 6 H 0.10 4.59 6.23 -2.91 -0.02 4.57 15 7 C -0.02 -0.99 4.95 84.84 0.42 -0.57 15 8 N -0.92 -48.54 9.41 21.64 0.20 -48.34 15 9 Si 0.99 40.53 29.58 68.60 2.03 42.56 15 10 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 11 H -0.30 -12.79 7.11 99.48 0.71 -12.08 15 12 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 13 C 0.15 6.34 6.47 38.35 0.25 6.59 15 14 C -0.19 -7.10 9.09 22.41 0.20 -6.89 15 15 C -0.15 -4.79 9.89 22.38 0.22 -4.57 15 16 C 0.13 3.87 6.76 38.23 0.26 4.13 15 17 N -0.88 -19.37 9.09 -51.22 -0.47 -19.83 15 18 C -0.15 -5.05 9.89 22.38 0.22 -4.83 15 19 C -0.17 -7.08 9.26 22.41 0.21 -6.88 15 20 H 0.11 4.75 6.75 -2.38 -0.02 4.74 15 21 H 0.12 3.85 6.55 -2.39 -0.02 3.84 15 22 H 0.26 13.78 8.31 -92.71 -0.77 13.01 15 23 H 0.12 4.09 6.14 -2.91 -0.02 4.07 15 24 H 0.13 3.48 8.06 -2.91 -0.02 3.45 15 25 H 0.40 7.06 8.84 -92.71 -0.82 6.24 15 26 H 0.40 7.19 8.84 -92.71 -0.82 6.37 15 27 H 0.13 3.63 8.06 -2.91 -0.02 3.60 15 28 H 0.11 4.57 6.19 -2.91 -0.02 4.55 15 Total: -1.00 -61.24 247.74 4.42 -56.82 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.42 Total: 22.52 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.11 Total: -2.97 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -1.30 Total: -118.93 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -61.24 4.42 -56.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019266171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.716 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds