Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47200 * 34.21305 * 3 2 1 5 5 C 1.36810 * 120.00104 * 275.39769 * 4 3 2 6 6 H 1.08000 * 119.99685 * 6.36722 * 5 4 3 7 7 C 1.38749 * 119.99956 * 186.37012 * 5 4 3 8 8 N 1.31634 * 120.00205 * 20.74155 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 200.73958 * 7 5 4 10 10 H 1.48495 * 109.47314 * 59.99869 * 9 7 5 11 11 H 1.48506 * 109.47028 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46692 * 299.99724 * 9 7 5 13 13 C 1.39395 * 120.00234 * 95.39951 * 4 3 2 14 14 C 1.38926 * 120.12457 * 89.97271 * 13 4 3 15 15 C 1.38131 * 119.98571 * 180.02562 * 14 13 4 16 16 C 1.38366 * 120.22952 * 0.02562 * 15 14 13 17 17 C 1.38230 * 120.24390 * 0.02562 * 16 15 14 18 18 C 1.38701 * 120.01367 * 359.97438 * 17 16 15 19 19 N 1.39778 * 120.11461 * 179.72894 * 18 17 16 20 20 H 1.09005 * 109.47029 * 274.21196 * 3 2 1 21 21 H 1.08994 * 109.47075 * 154.21759 * 3 2 1 22 22 H 0.96991 * 120.00123 * 180.02562 * 8 7 5 23 23 H 1.08002 * 120.00548 * 0.02562 * 14 13 4 24 24 H 1.07993 * 119.88513 * 180.02562 * 15 14 13 25 25 H 1.07992 * 119.87878 * 180.02562 * 16 15 14 26 26 H 1.07999 * 119.99564 * 179.97438 * 17 16 15 27 27 H 0.97002 * 119.99587 * 359.97438 * 19 18 17 28 28 H 0.96997 * 119.99666 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.1413 -0.7766 5 6 3.2204 -2.3685 -0.1847 6 1 2.8621 -2.5206 0.8227 7 6 3.8061 -3.4176 -0.8786 8 7 4.5942 -3.1703 -1.9035 9 14 3.4762 -5.1811 -0.3584 10 1 2.0204 -5.4597 -0.4485 11 1 4.2144 -6.1077 -1.2538 12 1 3.9321 -5.3778 1.0412 13 6 3.4363 -0.9775 -2.1186 14 6 4.7336 -0.6283 -2.4722 15 6 5.0667 -0.4663 -3.8029 16 6 4.1119 -0.6500 -4.7873 17 6 2.8179 -0.9965 -4.4462 18 6 2.4724 -1.1618 -3.1131 19 7 1.1632 -1.5066 -2.7655 20 1 2.9714 -0.0747 1.0249 21 1 2.9709 0.9261 -0.4470 22 1 5.0033 -3.9037 -2.3888 23 1 5.4817 -0.4836 -1.7067 24 1 6.0758 -0.1952 -4.0759 25 1 4.3785 -0.5223 -5.8260 26 1 2.0757 -1.1385 -5.2178 27 1 0.4944 -1.6303 -3.4571 28 1 0.9234 -1.6215 -1.8327 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019386153.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 85.524075 kcal Electronic energy + Delta-G solvation = -14467.475243 eV Core-core repulsion = 12098.464782 eV Total energy + Delta-G solvation = -2369.010461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.60245 -36.14854 -34.73312 -33.23713 -31.52273 -29.13000 -27.51542 -26.58034 -23.44615 -21.21195 -20.39392 -17.62591 -16.92615 -15.98007 -15.81592 -14.97577 -14.42363 -13.88075 -13.58402 -13.03272 -12.88024 -12.45552 -12.30902 -11.90433 -11.62790 -11.27571 -11.03148 -10.81746 -10.67210 -10.38791 -10.12293 -9.86350 -9.48497 -8.96818 -7.56870 -7.34647 -6.36029 -5.68581 -3.37867 2.69999 2.90142 3.29797 3.37608 3.40350 3.45671 3.49822 4.40758 4.80907 4.96732 5.14682 5.29270 5.38428 5.97143 5.98766 6.13286 6.22623 6.40957 6.70656 6.96603 7.14762 7.36569 7.59774 7.70014 7.93076 7.96967 8.17338 8.26911 8.59928 8.81663 9.15314 9.64342 10.01377 11.11633 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.016929 C = 0.011659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.577206 B = 1653.597319 C = 2401.070101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.200 3.800 3 C 0.229 3.771 4 N -0.543 5.543 5 C -0.295 4.295 6 H 0.082 0.918 7 C 0.024 3.976 8 N -0.865 5.865 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.180 3.820 14 C -0.017 4.017 15 C -0.184 4.184 16 C -0.100 4.100 17 C -0.213 4.213 18 C 0.198 3.802 19 N -0.879 5.879 20 H 0.098 0.902 21 H 0.092 0.908 22 H 0.257 0.743 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.380 0.620 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 5.198 -1.427 5.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.120 4.120 3 C 0.098 3.902 4 N -0.259 5.259 5 C -0.422 4.422 6 H 0.100 0.900 7 C -0.178 4.178 8 N -0.505 5.505 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.083 3.917 14 C -0.039 4.039 15 C -0.205 4.205 16 C -0.119 4.119 17 C -0.236 4.236 18 C 0.092 3.908 19 N -0.418 5.418 20 H 0.116 0.884 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.205 0.795 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.113 5.046 -1.512 5.384 hybrid contribution -0.086 -1.548 0.153 1.558 sum -1.200 3.498 -1.359 3.940 Atomic orbital electron populations 1.81001 1.14175 1.10030 1.10350 1.31807 0.97272 0.91432 0.91471 1.18601 0.79877 0.92662 0.99028 1.41203 1.73056 1.06213 1.05423 1.19078 1.37966 0.85258 0.99875 0.90042 1.24773 0.97215 0.98181 0.97618 1.70171 1.28252 1.30591 1.21452 0.86481 0.78045 0.85129 0.77812 1.21176 1.21556 1.20796 1.16422 0.91018 1.01120 0.83118 1.20854 0.94778 0.93505 0.94722 1.20455 0.97946 1.08846 0.93212 1.20427 0.93043 1.00974 0.97493 1.20107 0.97141 1.13002 0.93394 1.18328 0.85507 0.93941 0.93004 1.42362 1.08283 1.81089 1.10112 0.88388 0.88987 0.93214 0.87690 0.88539 0.88508 0.88626 0.79450 0.77325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.53 18.42 42.16 0.78 -8.76 15 2 C 0.20 3.72 13.97 -20.76 -0.29 3.43 15 3 C 0.23 3.95 6.15 -6.83 -0.04 3.91 15 4 N -0.54 -11.86 1.79 -116.10 -0.21 -12.06 15 5 C -0.30 -7.24 9.69 -15.14 -0.15 -7.39 15 6 H 0.08 1.95 7.91 -52.49 -0.42 1.54 15 7 C 0.02 0.62 5.23 -17.45 -0.09 0.53 15 8 N -0.86 -22.99 9.83 55.49 0.55 -22.44 15 9 Si 0.90 20.97 29.60 -169.99 -5.03 15.94 15 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 13 C 0.18 4.03 3.10 -83.61 -0.26 3.77 15 14 C -0.02 -0.38 8.06 -39.37 -0.32 -0.69 15 15 C -0.18 -3.65 10.03 -39.57 -0.40 -4.05 15 16 C -0.10 -1.94 10.04 -39.54 -0.40 -2.33 15 17 C -0.21 -4.31 9.89 -39.41 -0.39 -4.70 15 18 C 0.20 4.32 6.78 -83.51 -0.57 3.76 15 19 N -0.88 -18.02 9.06 32.55 0.29 -17.72 15 20 H 0.10 1.47 8.08 -51.93 -0.42 1.05 15 21 H 0.09 1.36 8.00 -51.93 -0.42 0.94 15 22 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 23 H 0.11 2.27 8.06 -52.49 -0.42 1.84 15 24 H 0.10 1.70 8.06 -52.49 -0.42 1.27 15 25 H 0.10 1.60 8.06 -52.49 -0.42 1.17 15 26 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.38 6.81 8.84 -40.82 -0.36 6.45 15 28 H 0.40 8.64 6.15 -40.82 -0.25 8.39 15 LS Contribution 252.48 15.07 3.80 3.80 Total: -1.00 -28.10 252.48 -5.40 -33.51 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -2.69 Total: 11.50 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.90 Total: -3.77 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 1.41 Total: -60.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.10 -5.40 -33.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019386153.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.033 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds