Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47200 * 34.21305 * 3 2 1 5 5 C 1.36810 * 120.00104 * 275.39769 * 4 3 2 6 6 H 1.08000 * 119.99685 * 6.36722 * 5 4 3 7 7 C 1.38749 * 119.99956 * 186.37012 * 5 4 3 8 8 N 1.31634 * 120.00205 * 20.74155 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 200.73958 * 7 5 4 10 10 H 1.48495 * 109.47314 * 59.99869 * 9 7 5 11 11 H 1.48506 * 109.47028 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46692 * 299.99724 * 9 7 5 13 13 C 1.39395 * 120.00234 * 95.39951 * 4 3 2 14 14 C 1.38926 * 120.12457 * 89.97271 * 13 4 3 15 15 C 1.38131 * 119.98571 * 180.02562 * 14 13 4 16 16 C 1.38366 * 120.22952 * 0.02562 * 15 14 13 17 17 C 1.38230 * 120.24390 * 0.02562 * 16 15 14 18 18 C 1.38701 * 120.01367 * 359.97438 * 17 16 15 19 19 N 1.39778 * 120.11461 * 179.72894 * 18 17 16 20 20 H 1.09005 * 109.47029 * 274.21196 * 3 2 1 21 21 H 1.08994 * 109.47075 * 154.21759 * 3 2 1 22 22 H 0.96991 * 120.00123 * 180.02562 * 8 7 5 23 23 H 1.08002 * 120.00548 * 0.02562 * 14 13 4 24 24 H 1.07993 * 119.88513 * 180.02562 * 15 14 13 25 25 H 1.07992 * 119.87878 * 180.02562 * 16 15 14 26 26 H 1.07999 * 119.99564 * 179.97438 * 17 16 15 27 27 H 0.97002 * 119.99587 * 359.97438 * 19 18 17 28 28 H 0.96997 * 119.99666 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.1413 -0.7766 5 6 3.2204 -2.3685 -0.1847 6 1 2.8621 -2.5206 0.8227 7 6 3.8061 -3.4176 -0.8786 8 7 4.5942 -3.1703 -1.9035 9 14 3.4762 -5.1811 -0.3584 10 1 2.0204 -5.4597 -0.4485 11 1 4.2144 -6.1077 -1.2538 12 1 3.9321 -5.3778 1.0412 13 6 3.4363 -0.9775 -2.1186 14 6 4.7336 -0.6283 -2.4722 15 6 5.0667 -0.4663 -3.8029 16 6 4.1119 -0.6500 -4.7873 17 6 2.8179 -0.9965 -4.4462 18 6 2.4724 -1.1618 -3.1131 19 7 1.1632 -1.5066 -2.7655 20 1 2.9714 -0.0747 1.0249 21 1 2.9709 0.9261 -0.4470 22 1 5.0033 -3.9037 -2.3888 23 1 5.4817 -0.4836 -1.7067 24 1 6.0758 -0.1952 -4.0759 25 1 4.3785 -0.5223 -5.8260 26 1 2.0757 -1.1385 -5.2178 27 1 0.4944 -1.6303 -3.4571 28 1 0.9234 -1.6215 -1.8327 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019386153.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 69.505898 kcal Electronic energy + Delta-G solvation = -14468.169844 eV Core-core repulsion = 12098.464782 eV Total energy + Delta-G solvation = -2369.705061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19294 -37.68519 -36.36144 -34.81887 -33.33681 -30.68436 -29.07285 -28.27233 -25.16369 -22.81748 -22.01732 -19.34773 -18.44560 -17.56785 -17.41373 -16.63724 -16.15637 -15.60135 -15.09418 -14.62347 -14.46494 -14.04045 -13.86539 -13.47197 -13.28878 -13.01271 -12.78115 -12.47074 -12.35586 -11.99785 -11.86585 -11.52906 -11.05513 -10.80302 -9.20076 -9.12773 -7.99550 -7.51250 -5.26113 1.13104 1.30665 1.45865 1.51719 1.53586 1.88338 2.03299 2.55807 3.23011 3.38585 3.51829 3.62102 3.73862 4.50593 4.65100 4.67614 4.88381 4.93203 5.14735 5.39395 5.59173 5.67221 5.81528 6.13791 6.20823 6.35426 6.51827 6.79440 6.95460 7.25040 7.31172 7.90960 8.19967 9.17826 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.016929 C = 0.011659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.577206 B = 1653.597319 C = 2401.070101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.215 3.785 3 C 0.226 3.774 4 N -0.552 5.552 5 C -0.286 4.286 6 H 0.085 0.915 7 C -0.019 4.019 8 N -0.882 5.882 9 Si 0.939 3.061 10 H -0.296 1.296 11 H -0.301 1.301 12 H -0.275 1.275 13 C 0.162 3.838 14 C -0.030 4.030 15 C -0.187 4.187 16 C -0.100 4.100 17 C -0.221 4.221 18 C 0.178 3.822 19 N -0.878 5.878 20 H 0.125 0.875 21 H 0.120 0.880 22 H 0.245 0.755 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.114 0.886 27 H 0.390 0.610 28 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 5.845 -1.672 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.105 4.105 3 C 0.097 3.903 4 N -0.269 5.269 5 C -0.414 4.414 6 H 0.102 0.898 7 C -0.219 4.219 8 N -0.524 5.524 9 Si 0.770 3.230 10 H -0.223 1.223 11 H -0.227 1.227 12 H -0.200 1.200 13 C 0.065 3.935 14 C -0.052 4.052 15 C -0.208 4.208 16 C -0.119 4.119 17 C -0.245 4.245 18 C 0.072 3.928 19 N -0.418 5.418 20 H 0.142 0.858 21 H 0.138 0.862 22 H 0.055 0.945 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.145 0.855 26 H 0.132 0.868 27 H 0.217 0.783 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.004 5.715 -1.747 6.059 hybrid contribution -0.140 -1.687 0.235 1.709 sum -1.144 4.028 -1.512 4.452 Atomic orbital electron populations 1.81015 1.15022 1.10877 1.11357 1.31904 0.97336 0.90625 0.90592 1.18989 0.78720 0.92400 1.00206 1.41282 1.73248 1.06584 1.05746 1.19317 1.35892 0.86381 0.99762 0.89759 1.25227 0.98119 1.00153 0.98372 1.70314 1.29557 1.30018 1.22482 0.85789 0.76836 0.82857 0.77566 1.22296 1.22723 1.20036 1.16611 0.91524 1.01899 0.83477 1.20908 0.94464 0.94323 0.95457 1.20741 0.99206 1.08140 0.92713 1.20790 0.92456 0.99670 0.98987 1.20429 0.98151 1.12566 0.93313 1.18557 0.85875 0.94671 0.93707 1.42321 1.08350 1.81187 1.09991 0.85776 0.86198 0.94521 0.88475 0.86424 0.85455 0.86842 0.78288 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.51 18.42 20.01 0.37 -19.14 15 2 C 0.21 7.62 13.97 89.44 1.25 8.87 15 3 C 0.23 7.30 6.15 84.57 0.52 7.82 15 4 N -0.55 -23.34 1.79 -521.24 -0.93 -24.28 15 5 C -0.29 -13.69 9.69 84.04 0.81 -12.87 15 6 H 0.08 3.91 7.91 -2.91 -0.02 3.89 15 7 C -0.02 -0.99 5.23 84.84 0.44 -0.55 15 8 N -0.88 -46.64 9.83 21.64 0.21 -46.43 15 9 Si 0.94 42.99 29.60 68.60 2.03 45.02 15 10 H -0.30 -13.87 7.11 99.48 0.71 -13.16 15 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 15 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 13 C 0.16 7.05 3.10 38.46 0.12 7.17 15 14 C -0.03 -1.28 8.06 22.41 0.18 -1.10 15 15 C -0.19 -7.08 10.03 22.27 0.22 -6.85 15 16 C -0.10 -3.62 10.04 22.30 0.22 -3.40 15 17 C -0.22 -8.53 9.89 22.38 0.22 -8.31 15 18 C 0.18 7.52 6.78 38.34 0.26 7.78 15 19 N -0.88 -35.11 9.06 -50.94 -0.46 -35.57 15 20 H 0.12 3.38 8.08 -2.38 -0.02 3.36 15 21 H 0.12 3.23 8.00 -2.39 -0.02 3.21 15 22 H 0.24 13.19 8.31 -92.72 -0.77 12.42 15 23 H 0.10 4.14 8.06 -2.91 -0.02 4.12 15 24 H 0.12 3.85 8.06 -2.91 -0.02 3.83 15 25 H 0.13 3.75 8.06 -2.91 -0.02 3.73 15 26 H 0.11 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.39 13.56 8.84 -92.71 -0.82 12.74 15 28 H 0.39 16.62 6.15 -92.71 -0.57 16.05 15 Total: -1.00 -57.95 252.48 5.28 -52.67 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.20 Total: 29.16 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 4.26 Total: -1.43 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -0.81 Total: -125.42 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -57.95 5.28 -52.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019386153.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.179 kcal (2) G-P(sol) polarization free energy of solvation -57.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds