Wall clock time and date at job start Mon Mar 30 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.26544 * 324.37720 * 11 10 9 13 13 C 1.54337 * 110.30434 * 202.20051 * 11 10 9 14 14 C 1.54352 * 102.39171 * 267.42012 * 13 11 10 15 15 C 1.51369 * 105.16525 * 333.65283 * 14 13 11 16 16 C 1.38496 * 130.38409 * 197.17720 * 15 14 13 17 17 C 1.38104 * 120.21332 * 180.02562 * 16 15 14 18 18 C 1.38249 * 119.93671 * 0.02562 * 17 16 15 19 19 C 1.38104 * 119.93093 * 359.97438 * 18 17 16 20 20 C 1.38213 * 109.76233 * 17.19217 * 15 14 13 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.00902 * 110.99679 * 303.95249 * 10 9 7 25 25 H 1.09008 * 110.82598 * 25.64000 * 13 11 10 26 26 H 1.08996 * 110.82632 * 149.19208 * 13 11 10 27 27 H 1.09002 * 110.30129 * 214.72897 * 14 13 11 28 28 H 1.09003 * 110.30256 * 92.57332 * 14 13 11 29 29 H 1.08001 * 119.89148 * 0.02971 * 16 15 14 30 30 H 1.08003 * 120.03211 * 180.02562 * 17 16 15 31 31 H 1.07991 * 120.03494 * 180.02562 * 18 17 16 32 32 H 1.08008 * 119.89031 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5951 -4.8426 0.5970 13 6 2.4285 -6.0165 0.5481 14 6 3.0769 -6.5719 -0.7379 15 6 2.0802 -6.2838 -1.8401 16 6 1.9721 -6.8166 -3.1139 17 6 0.9657 -6.3949 -3.9605 18 6 0.0631 -5.4376 -3.5361 19 6 0.1693 -4.9052 -2.2663 20 6 1.1774 -5.3273 -1.4155 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8406 -3.5486 -0.7809 25 1 3.1841 -5.5990 1.2137 26 1 1.8488 -6.7884 1.0542 27 1 3.2395 -7.6458 -0.6461 28 1 4.0192 -6.0614 -0.9372 29 1 2.6771 -7.5642 -3.4462 30 1 0.8839 -6.8126 -4.9531 31 1 -0.7247 -5.1070 -4.1967 32 1 -0.5365 -4.1576 -1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:04 Heat of formation + Delta-G solvation = 12.736458 kcal Electronic energy + Delta-G solvation = -14132.398251 eV Core-core repulsion = 11863.771826 eV Total energy + Delta-G solvation = -2268.626425 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99156 -36.18280 -34.01868 -32.13862 -30.45485 -28.70108 -26.83061 -24.64683 -22.48291 -21.89875 -20.64178 -20.05974 -16.99784 -16.17895 -15.36571 -14.90563 -14.80530 -13.93344 -13.71975 -13.49330 -13.10529 -12.59880 -12.52332 -12.03739 -11.83831 -11.35969 -11.12251 -10.88221 -10.73683 -10.68018 -10.57225 -10.34838 -10.05547 -8.66429 -8.62665 -8.46510 -8.35350 -7.40951 -6.37670 -4.06363 1.55924 1.60482 3.44923 3.47321 3.65845 3.96721 4.53385 4.62464 4.82761 5.15997 5.19142 5.22293 5.36129 5.39533 5.44155 5.64065 5.71402 5.82708 6.02416 6.06485 6.21243 6.27434 6.39833 6.41490 6.65242 6.70613 6.90307 6.97197 7.17731 7.21900 7.76161 8.13502 8.43583 8.56896 8.86790 9.65025 11.02157 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.007505 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.114092 B = 3730.097890 C = 4125.526719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.055 0.945 9 C 0.182 3.818 10 N -0.664 5.664 11 C 0.118 3.882 12 H 0.078 0.922 13 C -0.111 4.111 14 C -0.081 4.081 15 C -0.094 4.094 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.095 4.095 20 C -0.118 4.118 21 H 0.266 0.734 22 H 0.018 0.982 23 H -0.019 1.019 24 H 0.333 0.667 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -13.406 -4.596 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.634 4.634 8 H 0.073 0.927 9 C 0.055 3.945 10 N -0.292 5.292 11 C 0.008 3.992 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.118 4.118 15 C -0.095 4.095 16 C -0.134 4.134 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.114 4.114 20 C -0.120 4.120 21 H 0.077 0.923 22 H 0.036 0.964 23 H -0.002 1.002 24 H 0.150 0.850 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.824 -11.711 -3.870 12.653 hybrid contribution -0.252 -1.684 -1.105 2.030 sum 2.571 -13.396 -4.974 14.519 Atomic orbital electron populations 1.70796 1.06865 1.30381 1.46913 1.25854 0.96494 1.02721 0.93805 0.83488 0.74804 0.75075 0.76553 1.20794 1.21498 1.21333 1.22000 0.94801 0.91309 1.55313 0.92660 1.19722 0.91372 0.88834 0.94584 1.60881 1.19805 1.00121 1.48372 1.21154 0.96665 0.91508 0.89906 0.90384 1.22334 0.99227 0.96815 0.96523 1.21067 0.97339 1.00793 0.92566 1.20663 0.97183 0.96904 0.94738 1.20555 0.98888 1.00806 0.93150 1.20958 0.95722 0.98292 0.99269 1.21025 0.99646 0.97661 0.95965 1.20799 0.97845 0.99116 0.93624 1.21576 0.95191 0.96539 0.98704 0.92334 0.96439 1.00167 0.84972 0.89442 0.91376 0.91228 0.90246 0.86704 0.86326 0.86216 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.44 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.60 -17.33 9.32 -34.44 -0.32 -17.66 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.18 4.79 4.58 -4.97 -0.02 4.77 16 10 N -0.66 -14.60 6.27 -108.12 -0.68 -15.27 16 11 C 0.12 2.17 3.18 -67.84 -0.22 1.96 16 12 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 13 C -0.11 -1.63 6.78 -25.32 -0.17 -1.80 16 14 C -0.08 -1.09 6.77 -26.85 -0.18 -1.27 16 15 C -0.09 -1.45 6.14 -104.21 -0.64 -2.09 16 16 C -0.12 -1.61 10.04 -39.54 -0.40 -2.00 16 17 C -0.12 -1.68 10.05 -39.63 -0.40 -2.08 16 18 C -0.12 -1.88 10.05 -39.63 -0.40 -2.28 16 19 C -0.10 -1.67 9.57 -39.54 -0.38 -2.05 16 20 C -0.12 -2.08 5.39 -104.21 -0.56 -2.64 16 21 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 22 H 0.02 0.49 7.94 -51.93 -0.41 0.08 16 23 H -0.02 -0.53 6.96 -51.93 -0.36 -0.89 16 24 H 0.33 7.34 8.48 -39.29 -0.33 7.01 16 25 H 0.09 1.30 8.08 -51.92 -0.42 0.88 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.19 7.56 -52.48 -0.40 1.79 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -31.16 268.96 -9.10 -40.26 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.37 Total: 4.59 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -3.78 Total: -26.81 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.08 Total: -42.71 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.16 -9.10 -40.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.998 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds