Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.26544 * 324.37720 * 11 10 9 13 13 C 1.54337 * 110.30434 * 202.20051 * 11 10 9 14 14 C 1.54352 * 102.39171 * 267.42012 * 13 11 10 15 15 C 1.51369 * 105.16525 * 333.65283 * 14 13 11 16 16 C 1.38496 * 130.38409 * 197.17720 * 15 14 13 17 17 C 1.38104 * 120.21332 * 180.02562 * 16 15 14 18 18 C 1.38249 * 119.93671 * 0.02562 * 17 16 15 19 19 C 1.38104 * 119.93093 * 359.97438 * 18 17 16 20 20 C 1.38213 * 109.76233 * 17.19217 * 15 14 13 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.00902 * 110.99679 * 303.95249 * 10 9 7 25 25 H 1.09008 * 110.82598 * 25.64000 * 13 11 10 26 26 H 1.08996 * 110.82632 * 149.19208 * 13 11 10 27 27 H 1.09002 * 110.30129 * 214.72897 * 14 13 11 28 28 H 1.09003 * 110.30256 * 92.57332 * 14 13 11 29 29 H 1.08001 * 119.89148 * 0.02971 * 16 15 14 30 30 H 1.08003 * 120.03211 * 180.02562 * 17 16 15 31 31 H 1.07991 * 120.03494 * 180.02562 * 18 17 16 32 32 H 1.08008 * 119.89031 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5951 -4.8426 0.5970 13 6 2.4285 -6.0165 0.5481 14 6 3.0769 -6.5719 -0.7379 15 6 2.0802 -6.2838 -1.8401 16 6 1.9721 -6.8166 -3.1139 17 6 0.9657 -6.3949 -3.9605 18 6 0.0631 -5.4376 -3.5361 19 6 0.1693 -4.9052 -2.2663 20 6 1.1774 -5.3273 -1.4155 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8406 -3.5486 -0.7809 25 1 3.1841 -5.5990 1.2137 26 1 1.8488 -6.7884 1.0542 27 1 3.2395 -7.6458 -0.6461 28 1 4.0192 -6.0614 -0.9372 29 1 2.6771 -7.5642 -3.4462 30 1 0.8839 -6.8126 -4.9531 31 1 -0.7247 -5.1070 -4.1967 32 1 -0.5365 -4.1576 -1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -6.751975 kcal Electronic energy + Delta-G solvation = -14133.243333 eV Core-core repulsion = 11863.771826 eV Total energy + Delta-G solvation = -2269.471507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24635 -37.63393 -35.85798 -33.95418 -31.81293 -29.90742 -28.54969 -26.41553 -24.17529 -23.51282 -21.80362 -21.44059 -19.09164 -17.58345 -16.78272 -16.16768 -16.10041 -15.67680 -15.44907 -15.16610 -14.52010 -14.02051 -13.88478 -13.69767 -13.53618 -12.93733 -12.68986 -12.50433 -12.30571 -11.99117 -11.91921 -11.86192 -11.75749 -10.79602 -10.65986 -9.89258 -9.64457 -9.18530 -8.74704 -6.45800 0.36338 0.40218 1.51088 1.60203 1.79984 2.53286 2.76659 3.10011 3.40259 3.43130 3.75364 4.05474 4.10211 4.16037 4.23193 4.37519 4.56261 4.66837 4.71315 4.78857 4.88393 4.94737 5.09590 5.11437 5.20048 5.23824 5.49186 5.53747 5.68600 5.69726 5.96579 6.06332 6.33081 6.48089 6.60261 7.36584 8.64497 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.007505 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.114092 B = 3730.097890 C = 4125.526719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.124 2.876 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.614 4.614 8 H 0.056 0.944 9 C 0.197 3.803 10 N -0.661 5.661 11 C 0.110 3.890 12 H 0.055 0.945 13 C -0.103 4.103 14 C -0.074 4.074 15 C -0.096 4.096 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.126 4.126 20 C -0.148 4.148 21 H 0.252 0.748 22 H -0.009 1.009 23 H -0.041 1.041 24 H 0.333 0.667 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 -14.893 -5.826 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.944 3.056 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.651 4.651 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.289 5.289 11 C 0.000 4.000 12 H 0.073 0.927 13 C -0.140 4.140 14 C -0.110 4.110 15 C -0.097 4.097 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.150 4.150 21 H 0.061 0.939 22 H 0.009 0.991 23 H -0.023 1.023 24 H 0.150 0.850 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.845 -13.246 -5.098 14.998 hybrid contribution -0.937 -1.321 -0.760 1.789 sum 3.907 -14.567 -5.858 16.180 Atomic orbital electron populations 1.70928 1.07943 1.29564 1.48755 1.27528 0.96528 1.06893 0.92491 0.82859 0.74029 0.70605 0.78103 1.20697 1.19347 1.19286 1.22382 0.95036 0.92619 1.55111 0.92606 1.19362 0.91369 0.90122 0.92278 1.60794 1.19126 1.00577 1.48367 1.21291 0.96619 0.90908 0.91148 0.92707 1.22307 0.98570 0.95683 0.97485 1.21083 0.96555 1.02792 0.90599 1.20974 0.96708 0.95997 0.96030 1.21012 0.99166 1.00731 0.92157 1.21421 0.94378 0.96780 1.00750 1.21283 1.00752 0.98018 0.94966 1.20831 0.98321 0.99873 0.95499 1.21504 0.96758 0.98555 0.98177 0.93884 0.99080 1.02311 0.84968 0.89593 0.89378 0.87877 0.89784 0.83036 0.82564 0.84539 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.59 13.65 21.45 0.29 -59.29 16 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 3 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.61 -36.64 9.32 25.60 0.24 -36.40 16 8 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.20 10.98 4.58 85.56 0.39 11.37 16 10 N -0.66 -30.11 6.27 -495.99 -3.11 -33.22 16 11 C 0.11 4.19 3.18 44.84 0.14 4.34 16 12 H 0.05 2.26 7.86 -2.39 -0.02 2.25 16 13 C -0.10 -2.89 6.78 31.51 0.21 -2.68 16 14 C -0.07 -1.76 6.77 30.52 0.21 -1.55 16 15 C -0.10 -2.77 6.14 -19.60 -0.12 -2.89 16 16 C -0.11 -2.70 10.04 22.30 0.22 -2.48 16 17 C -0.12 -2.75 10.05 22.24 0.22 -2.53 16 18 C -0.13 -3.88 10.05 22.24 0.22 -3.66 16 19 C -0.13 -4.66 9.57 22.30 0.21 -4.45 16 20 C -0.15 -5.32 5.39 -19.60 -0.11 -5.42 16 21 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 22 H -0.01 -0.53 7.94 -2.39 -0.02 -0.55 16 23 H -0.04 -2.41 6.96 -2.39 -0.02 -2.42 16 24 H 0.33 15.02 8.48 -89.69 -0.76 14.26 16 25 H 0.09 2.45 8.08 -2.38 -0.02 2.43 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.14 3.40 8.06 -2.92 -0.02 3.37 16 32 H 0.09 3.66 7.56 -2.91 -0.02 3.64 16 Total: -1.00 -69.67 268.96 1.99 -67.67 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.44 Total: 19.41 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 2.31 Total: -48.11 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -2.81 Total: -92.51 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -69.67 1.99 -67.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.920 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds