Wall clock time and date at job start Mon Mar 30 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47309 * 270.00106 * 3 2 1 5 5 H 1.48494 * 109.47012 * 30.00821 * 3 2 1 6 6 H 1.48508 * 109.46867 * 150.00355 * 3 2 1 7 7 C 1.37875 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47170 * 179.97438 * 10 9 7 12 12 C 1.38264 * 120.00133 * 90.00315 * 11 10 9 13 13 C 1.38211 * 120.00688 * 180.02562 * 12 11 10 14 14 C 1.38185 * 120.03175 * 359.97438 * 13 12 11 15 15 C 1.38452 * 119.96337 * 359.97031 * 14 13 12 16 16 C 1.38180 * 119.96898 * 0.03462 * 15 14 13 17 17 C 1.51183 * 108.25100 * 179.97438 * 15 14 13 18 18 N 1.48058 * 105.67526 * 17.50016 * 17 15 14 19 19 C 1.48216 * 103.80383 * 332.19989 * 18 17 15 20 20 H 0.96992 * 120.00177 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47173 * 60.00268 * 9 7 2 22 22 H 1.08996 * 109.46874 * 299.99999 * 9 7 2 23 23 H 1.09003 * 109.47213 * 59.99970 * 10 9 7 24 24 H 1.09003 * 109.46919 * 300.00351 * 10 9 7 25 25 H 1.08001 * 119.99261 * 0.02562 * 12 11 10 26 26 H 1.07998 * 119.98724 * 179.97438 * 13 12 11 27 27 H 1.07994 * 119.98705 * 179.97438 * 16 15 14 28 28 H 1.09002 * 110.20057 * 136.54794 * 17 15 14 29 29 H 1.08997 * 110.20898 * 258.36849 * 17 15 14 30 30 H 1.00900 * 110.99619 * 213.03622 * 18 17 15 31 31 H 1.09000 * 110.31672 * 268.86102 * 19 18 17 32 32 H 1.09005 * 110.17974 * 146.91016 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4920 -4.9671 -0.0012 12 6 1.1451 -5.5657 -1.1983 13 6 0.4536 -6.7624 -1.1978 14 6 0.1090 -7.3616 -0.0013 15 6 0.4574 -6.7628 1.1975 16 6 1.1486 -5.5663 1.1962 17 6 -0.0455 -7.6344 2.3258 18 7 -0.3169 -8.9573 1.7190 19 6 -0.6371 -8.6398 0.3071 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8728 -3.6047 0.8877 24 1 2.8714 -3.6038 -0.8923 25 1 1.4145 -5.0980 -2.1338 26 1 0.1824 -7.2295 -2.1331 27 1 1.4202 -5.0988 2.1310 28 1 0.7164 -7.7245 3.1001 29 1 -0.9605 -7.2163 2.7453 30 1 -1.0972 -9.4094 2.1716 31 1 -1.7098 -8.4878 0.1872 32 1 -0.2945 -9.4426 -0.3459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036489759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:43 Heat of formation + Delta-G solvation = -3.113091 kcal Electronic energy + Delta-G solvation = -13681.705055 eV Core-core repulsion = 11412.391342 eV Total energy + Delta-G solvation = -2269.313713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18712 -37.89764 -35.57481 -33.60307 -32.11510 -30.39452 -28.53641 -26.74489 -24.40893 -23.08595 -22.23937 -20.98507 -18.54396 -17.71426 -16.58831 -16.49288 -16.38604 -15.89529 -15.07005 -14.58331 -14.49854 -14.21151 -13.98260 -13.66329 -13.41938 -13.08835 -12.84933 -12.82739 -12.50130 -12.18290 -11.93898 -11.61099 -11.55632 -11.19150 -10.57588 -10.04887 -9.67797 -9.07928 -8.21099 -6.33625 0.38060 0.45319 1.39974 1.41569 1.52863 2.40177 2.77640 3.11729 3.29440 3.46148 3.61281 4.05346 4.13024 4.38102 4.43223 4.47522 4.59086 4.62535 4.66755 4.83839 4.87196 4.98765 5.16125 5.22301 5.35471 5.44064 5.48216 5.54709 5.71141 5.81646 5.86731 6.08138 6.21219 6.36130 6.83090 7.36091 8.90589 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.059429 B = 0.005478 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.038411 B = 5110.305885 C = 5237.882537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.038 3.962 10 C -0.065 4.065 11 C -0.080 4.080 12 C -0.131 4.131 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.116 4.116 17 C 0.083 3.917 18 N -0.662 5.662 19 C 0.086 3.914 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.012 1.012 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.359 0.641 31 H 0.072 0.928 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -16.048 1.225 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.001 3.999 10 C -0.102 4.102 11 C -0.080 4.080 12 C -0.149 4.149 13 C -0.117 4.117 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.135 4.135 17 C -0.046 4.046 18 N -0.292 5.292 19 C -0.042 4.042 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.147 0.853 26 H 0.165 0.835 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.090 0.910 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.351 -16.207 1.161 16.253 hybrid contribution -0.697 1.707 0.037 1.844 sum -1.048 -14.500 1.199 14.588 Atomic orbital electron populations 1.70111 1.07939 1.27836 1.51590 1.26009 0.95747 1.03468 0.94568 0.85410 0.78655 0.78182 0.78577 1.19645 1.20745 1.18598 1.21707 0.93668 0.92153 1.50743 0.91859 1.18899 0.93958 0.92364 0.94665 1.20558 0.97289 0.90649 1.01718 1.20178 0.98257 0.95890 0.93689 1.21186 0.99883 0.96043 0.97776 1.20683 0.98103 0.94949 0.97933 1.20894 1.00603 0.98229 0.93588 1.20808 0.98881 0.95276 0.96980 1.20474 0.99921 0.95144 0.97913 1.21393 1.00796 0.87620 0.94781 1.63601 1.44419 1.18627 1.02557 1.21439 0.97908 0.93587 0.91288 0.92740 0.99211 0.99392 0.91934 0.91580 0.85316 0.83462 0.86290 0.88725 0.91366 0.82336 0.91020 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.04 2.09 4.96 29.85 0.15 2.24 16 10 C -0.06 -2.81 5.28 29.85 0.16 -2.66 16 11 C -0.08 -3.10 5.13 -19.86 -0.10 -3.20 16 12 C -0.13 -4.50 9.70 22.27 0.22 -4.29 16 13 C -0.10 -2.85 10.04 22.25 0.22 -2.63 16 14 C -0.13 -3.75 6.26 -19.67 -0.12 -3.88 16 15 C -0.12 -3.66 6.26 -19.67 -0.12 -3.78 16 16 C -0.12 -4.15 9.70 22.25 0.22 -3.94 16 17 C 0.08 1.93 7.45 85.49 0.64 2.57 16 18 N -0.66 -13.24 7.73 -514.27 -3.98 -17.22 16 19 C 0.09 1.77 7.46 85.45 0.64 2.41 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.06 2.62 8.08 -2.39 -0.02 2.60 16 24 H 0.07 2.73 8.09 -2.39 -0.02 2.72 16 25 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 26 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.36 5.02 8.91 -89.69 -0.80 4.22 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -67.45 272.85 1.22 -66.23 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.30 Total: 9.99 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 2.58 Total: -48.02 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -3.69 Total: -74.79 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.45 1.22 -66.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036489759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.114 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds