Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.21909 * 2 1 4 4 N 1.31685 * 121.36062 * 180.02562 * 3 2 1 5 5 C 1.32356 * 121.57365 * 359.97438 * 4 3 2 6 6 C 1.40623 * 120.36806 * 0.02562 * 5 4 3 7 7 C 1.38166 * 120.22416 * 180.02562 * 2 1 3 8 8 N 1.35671 * 107.13849 * 179.97438 * 6 5 4 9 9 C 1.30108 * 109.50044 * 359.72163 * 8 6 5 10 10 N 1.36126 * 110.08045 * 0.45294 * 9 8 6 11 11 C 1.46491 * 126.27193 * 179.81572 * 10 9 8 12 12 C 1.50702 * 109.46957 * 264.68781 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 H 1.08998 * 109.46587 * 90.00496 * 1 2 3 21 21 H 1.09004 * 109.46810 * 209.99684 * 1 2 3 22 22 H 1.08998 * 109.47396 * 330.00389 * 1 2 3 23 23 H 1.07997 * 119.32155 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.92335 * 359.96048 * 7 2 1 25 25 H 1.07998 * 124.95876 * 180.30656 * 9 8 6 26 26 H 1.09004 * 109.47166 * 144.69047 * 11 10 9 27 27 H 1.08994 * 109.47507 * 24.68753 * 11 10 9 28 28 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1978 0.0000 4 7 3.5213 1.2241 -0.0005 5 6 4.2366 0.1105 -0.0005 6 6 3.6000 -1.1434 -0.0005 7 6 2.2025 -1.1938 -0.0005 8 7 4.5750 -2.0868 -0.0011 9 6 5.7400 -1.5074 -0.0074 10 7 5.5891 -0.1546 -0.0012 11 6 6.6669 0.8376 -0.0015 12 6 6.9531 1.2687 1.4139 13 1 6.3889 0.8456 2.2319 14 6 7.9395 2.1988 1.6652 15 7 8.1930 2.5710 2.9008 16 14 8.9157 2.9302 0.2504 17 1 8.2332 4.1539 -0.2414 18 1 10.2808 3.2795 0.7194 19 1 9.0094 1.9388 -0.8512 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6572 2.1287 0.0004 24 1 1.6813 -2.1398 -0.0003 25 1 6.6882 -2.0244 -0.0141 26 1 6.3637 1.7032 -0.5906 27 1 7.5648 0.3987 -0.4362 28 1 8.8867 3.2255 3.0775 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057792553.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = 79.669050 kcal Electronic energy + Delta-G solvation = -13814.900715 eV Core-core repulsion = 11445.636361 eV Total energy + Delta-G solvation = -2369.264354 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70812 -38.09983 -34.32610 -33.08649 -32.10935 -29.75436 -28.20788 -26.40837 -23.57581 -22.99859 -21.25935 -20.03454 -17.22070 -17.13855 -16.79561 -15.40271 -15.09991 -14.34094 -13.99718 -13.45797 -13.32848 -12.80378 -12.62570 -12.46171 -12.20482 -11.86002 -11.80451 -11.40920 -10.88611 -10.59098 -10.26130 -9.91829 -9.57326 -8.82919 -8.63629 -7.98074 -7.91076 -6.30542 -4.34806 1.30248 1.72862 3.11302 3.15509 3.18920 3.24725 3.39436 4.18017 4.27903 4.53048 4.90687 4.97684 5.11298 5.22394 5.35515 5.41108 5.67892 5.75685 5.88123 5.99389 6.10596 6.40178 6.50700 6.58069 6.92540 7.14996 7.23489 7.58096 8.19615 8.28327 8.46504 8.71783 9.24112 10.81980 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.008191 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.610721 B = 3417.389373 C = 3744.910802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.164 4.164 3 C 0.126 3.874 4 N -0.463 5.463 5 C 0.243 3.757 6 C -0.002 4.002 7 C -0.031 4.031 8 N -0.513 5.513 9 C 0.278 3.722 10 N -0.447 5.447 11 C 0.211 3.789 12 C -0.544 4.544 13 H 0.079 0.921 14 C 0.081 3.919 15 N -0.885 5.885 16 Si 0.876 3.124 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.265 1.265 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.157 0.843 24 H 0.132 0.868 25 H 0.215 0.785 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -4.494 -7.373 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.169 4.169 3 C -0.044 4.044 4 N -0.173 5.173 5 C 0.006 3.994 6 C -0.124 4.124 7 C -0.059 4.059 8 N -0.233 5.233 9 C -0.009 4.009 10 N -0.134 5.134 11 C 0.092 3.908 12 C -0.582 4.582 13 H 0.097 0.903 14 C -0.124 4.124 15 N -0.521 5.521 16 Si 0.702 3.298 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.174 0.826 24 H 0.150 0.850 25 H 0.232 0.768 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.907 -4.342 -7.242 12.274 hybrid contribution 0.534 0.624 -0.443 0.933 sum -8.373 -3.718 -7.685 11.958 Atomic orbital electron populations 1.20571 0.90246 1.02670 1.01987 1.20517 0.97069 0.93643 1.05713 1.22375 0.87842 0.97278 0.96856 1.66360 1.07444 1.29803 1.13713 1.18989 0.85878 0.91172 1.03347 1.19718 0.94509 0.90579 1.07606 1.20403 0.89929 0.98122 0.97408 1.70424 0.97353 1.31454 1.24100 1.25291 0.98782 0.79793 0.97055 1.45586 1.04688 1.08129 1.55000 1.20151 0.83608 0.86946 1.00115 1.21091 1.20705 1.25851 0.90511 0.90320 1.24806 0.96311 0.95442 0.95829 1.69872 1.31842 1.31508 1.18927 0.86853 0.79971 0.80465 0.82463 1.19572 1.20527 1.18941 0.91507 0.91751 0.91438 0.82596 0.84984 0.76834 0.93643 0.93168 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.03 36.01 0.36 -0.60 15 2 C -0.16 -2.40 5.89 -104.51 -0.62 -3.01 15 3 C 0.13 2.10 10.83 -17.47 -0.19 1.91 15 4 N -0.46 -9.92 10.38 -12.27 -0.13 -10.05 15 5 C 0.24 5.40 8.01 -155.63 -1.25 4.16 15 6 C 0.00 -0.03 7.25 -84.67 -0.61 -0.65 15 7 C -0.03 -0.51 9.89 -39.01 -0.39 -0.90 15 8 N -0.51 -10.23 11.28 -12.00 -0.14 -10.36 15 9 C 0.28 5.29 12.49 -89.70 -1.12 4.17 15 10 N -0.45 -9.88 2.78 -118.91 -0.33 -10.21 15 11 C 0.21 4.94 4.99 -5.20 -0.03 4.92 15 12 C -0.54 -15.12 9.94 -34.44 -0.34 -15.47 15 13 H 0.08 2.49 8.06 -52.49 -0.42 2.06 15 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 15 15 N -0.88 -26.31 13.96 55.43 0.77 -25.53 15 16 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 15 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 19 H -0.26 -5.65 6.54 56.52 0.37 -5.28 15 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 0.57 8.09 -51.93 -0.42 0.15 15 22 H 0.07 0.58 8.09 -51.93 -0.42 0.16 15 23 H 0.16 2.02 8.06 -52.49 -0.42 1.60 15 24 H 0.13 1.81 8.06 -52.48 -0.42 1.39 15 25 H 0.22 3.09 8.06 -52.49 -0.42 2.66 15 26 H 0.05 1.08 7.58 -51.93 -0.39 0.69 15 27 H 0.05 1.07 7.18 -51.93 -0.37 0.69 15 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 251.02 15.07 3.78 3.78 Total: -1.00 -32.76 251.02 -7.87 -40.63 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.89 Total: -0.41 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -4.28 Total: -3.33 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.18 Total: -56.15 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.76 -7.87 -40.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792553.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.298 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds