Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.21909 * 2 1 4 4 N 1.31685 * 121.36062 * 180.02562 * 3 2 1 5 5 C 1.32356 * 121.57365 * 359.97438 * 4 3 2 6 6 C 1.40623 * 120.36806 * 0.02562 * 5 4 3 7 7 C 1.38166 * 120.22416 * 180.02562 * 2 1 3 8 8 N 1.35671 * 107.13849 * 179.97438 * 6 5 4 9 9 C 1.30108 * 109.50044 * 359.72163 * 8 6 5 10 10 N 1.36126 * 110.08045 * 0.45294 * 9 8 6 11 11 C 1.46491 * 126.27193 * 179.81572 * 10 9 8 12 12 C 1.50702 * 109.46957 * 264.68781 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 H 1.08998 * 109.46587 * 90.00496 * 1 2 3 21 21 H 1.09004 * 109.46810 * 209.99684 * 1 2 3 22 22 H 1.08998 * 109.47396 * 330.00389 * 1 2 3 23 23 H 1.07997 * 119.32155 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.92335 * 359.96048 * 7 2 1 25 25 H 1.07998 * 124.95876 * 180.30656 * 9 8 6 26 26 H 1.09004 * 109.47166 * 144.69047 * 11 10 9 27 27 H 1.08994 * 109.47507 * 24.68753 * 11 10 9 28 28 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1978 0.0000 4 7 3.5213 1.2241 -0.0005 5 6 4.2366 0.1105 -0.0005 6 6 3.6000 -1.1434 -0.0005 7 6 2.2025 -1.1938 -0.0005 8 7 4.5750 -2.0868 -0.0011 9 6 5.7400 -1.5074 -0.0074 10 7 5.5891 -0.1546 -0.0012 11 6 6.6669 0.8376 -0.0015 12 6 6.9531 1.2687 1.4139 13 1 6.3889 0.8456 2.2319 14 6 7.9395 2.1988 1.6652 15 7 8.1930 2.5710 2.9008 16 14 8.9157 2.9302 0.2504 17 1 8.2332 4.1539 -0.2414 18 1 10.2808 3.2795 0.7194 19 1 9.0094 1.9388 -0.8512 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6572 2.1287 0.0004 24 1 1.6813 -2.1398 -0.0003 25 1 6.6882 -2.0244 -0.0141 26 1 6.3637 1.7032 -0.5906 27 1 7.5648 0.3987 -0.4362 28 1 8.8867 3.2255 3.0775 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792553.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = 58.922764 kcal Electronic energy + Delta-G solvation = -13815.800341 eV Core-core repulsion = 11445.636361 eV Total energy + Delta-G solvation = -2370.163980 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.17065 -39.47261 -36.06385 -34.66201 -33.77848 -31.11618 -30.01513 -27.61981 -24.98187 -24.84100 -22.63767 -21.55013 -19.30399 -18.65249 -18.22675 -16.90092 -16.69626 -16.04941 -15.37839 -14.98572 -14.54944 -14.37113 -14.10699 -13.94454 -13.50452 -13.33364 -13.04122 -12.76756 -12.65894 -12.30176 -11.87813 -11.74923 -11.27384 -10.93232 -10.08514 -9.48095 -9.30810 -8.43991 -6.55628 -0.05600 0.36416 1.32109 1.35763 1.44249 1.68139 1.91470 2.23977 2.87810 2.89484 3.18328 3.52902 3.82532 4.04357 4.10604 4.23334 4.40266 4.50591 4.59072 4.86261 4.97522 5.12613 5.18119 5.22883 5.37017 5.50905 5.78726 5.89515 6.23427 6.46383 6.78039 7.02667 7.10175 8.72976 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.008191 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.610721 B = 3417.389373 C = 3744.910802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.145 4.145 3 C 0.122 3.878 4 N -0.510 5.510 5 C 0.200 3.800 6 C -0.023 4.023 7 C -0.039 4.039 8 N -0.522 5.522 9 C 0.273 3.727 10 N -0.466 5.466 11 C 0.224 3.776 12 C -0.552 4.552 13 H 0.020 0.980 14 C 0.021 3.979 15 N -0.938 5.938 16 Si 0.955 3.045 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.232 1.232 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.190 0.810 24 H 0.161 0.839 25 H 0.253 0.747 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 -4.725 -9.309 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C -0.047 4.047 4 N -0.222 5.222 5 C -0.035 4.035 6 C -0.144 4.144 7 C -0.067 4.067 8 N -0.243 5.243 9 C -0.013 4.013 10 N -0.155 5.155 11 C 0.103 3.897 12 C -0.590 4.590 13 H 0.038 0.962 14 C -0.179 4.179 15 N -0.576 5.576 16 Si 0.776 3.224 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.155 1.155 20 H 0.106 0.894 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.207 0.793 24 H 0.179 0.821 25 H 0.268 0.732 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.058 -4.611 -9.188 14.382 hybrid contribution 0.654 0.686 0.254 0.981 sum -9.404 -3.925 -8.933 13.551 Atomic orbital electron populations 1.20699 0.86170 1.04385 1.03822 1.21044 0.99646 0.92094 1.02228 1.23142 0.86770 0.99720 0.95034 1.66349 1.09621 1.30438 1.15799 1.19414 0.86261 0.92359 1.05445 1.20198 0.96041 0.89883 1.08314 1.20893 0.88649 1.00203 0.96916 1.70415 0.97762 1.31531 1.24596 1.26092 1.00089 0.78980 0.96160 1.45589 1.04612 1.08771 1.56503 1.19878 0.85235 0.87663 0.96938 1.21205 1.20194 1.26059 0.91494 0.96184 1.25862 0.97416 0.95560 0.99037 1.70036 1.33060 1.32651 1.21890 0.85627 0.77823 0.79934 0.79060 1.19399 1.19894 1.15457 0.89366 0.90201 0.89646 0.79276 0.82146 0.73158 0.94117 0.90184 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.03 71.24 0.71 -0.73 15 2 C -0.15 -3.88 5.89 -19.79 -0.12 -3.99 15 3 C 0.12 3.89 10.83 84.81 0.92 4.81 15 4 N -0.51 -22.14 10.38 -192.74 -2.00 -24.14 15 5 C 0.20 9.06 8.01 133.84 1.07 10.13 15 6 C -0.02 -0.91 7.25 39.52 0.29 -0.63 15 7 C -0.04 -1.22 9.89 22.64 0.22 -1.00 15 8 N -0.52 -20.78 11.28 -191.87 -2.16 -22.95 15 9 C 0.27 10.37 12.49 180.03 2.25 12.62 15 10 N -0.47 -20.92 2.78 -530.11 -1.47 -22.40 15 11 C 0.22 10.46 4.99 85.64 0.43 10.89 15 12 C -0.55 -31.78 9.94 25.60 0.25 -31.53 15 13 H 0.02 1.34 8.06 -2.91 -0.02 1.32 15 14 C 0.02 1.19 5.47 84.66 0.46 1.65 15 15 N -0.94 -57.66 13.96 21.45 0.30 -57.36 15 16 Si 0.95 41.22 27.47 68.60 1.88 43.10 15 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 19 H -0.23 -8.72 6.54 99.48 0.65 -8.07 15 20 H 0.09 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.08 1.05 8.09 -2.38 -0.02 1.03 15 22 H 0.08 1.07 8.09 -2.39 -0.02 1.05 15 23 H 0.19 4.46 8.06 -2.91 -0.02 4.44 15 24 H 0.16 3.96 8.06 -2.91 -0.02 3.94 15 25 H 0.25 6.95 8.06 -2.91 -0.02 6.93 15 26 H 0.04 1.93 7.58 -2.38 -0.02 1.91 15 27 H 0.08 3.24 7.18 -2.39 -0.02 3.23 15 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 Total: -1.00 -75.69 251.02 4.14 -71.55 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.11 Total: 9.97 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.49 Total: 2.23 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.34 Total: -126.85 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Total: -75.69 4.14 -71.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792553.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.474 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds