Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47106 * 2 1 4 4 C 1.37964 * 126.52580 * 90.02410 * 3 2 1 5 5 C 1.40205 * 125.30710 * 0.24466 * 4 3 2 6 6 H 1.08008 * 120.00090 * 359.71424 * 5 4 3 7 7 C 1.40353 * 120.00450 * 179.71970 * 5 4 3 8 8 N 1.30578 * 119.99444 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00244 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46995 * 60.00014 * 9 7 5 11 11 H 1.48503 * 109.47262 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47372 * 299.99884 * 9 7 5 13 13 N 1.32504 * 109.38854 * 179.97438 * 4 3 2 14 14 C 1.33819 * 109.74215 * 0.02562 * 13 4 3 15 15 C 1.40354 * 134.08833 * 179.97438 * 14 13 4 16 16 N 1.31470 * 120.18967 * 179.97438 * 15 14 13 17 17 C 1.32387 * 122.47934 * 0.02562 * 16 15 14 18 18 C 1.37929 * 121.40517 * 359.97438 * 17 16 15 19 19 C 1.37410 * 126.52709 * 269.99988 * 3 2 1 20 20 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47091 * 300.00217 * 1 2 3 22 22 H 1.09004 * 109.46953 * 60.00297 * 1 2 3 23 23 H 1.09002 * 109.47091 * 239.99783 * 2 1 3 24 24 H 1.09004 * 109.46953 * 119.99703 * 2 1 3 25 25 H 0.97001 * 119.99704 * 180.02562 * 8 7 5 26 26 H 1.08002 * 119.91069 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.30067 * 179.97438 * 17 16 15 28 28 H 1.07992 * 120.55351 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2925 2.1552 1.1087 5 6 2.1519 1.7413 2.4408 6 1 1.7992 0.7448 2.6623 7 6 2.4694 2.6218 3.4866 8 7 2.8952 3.8268 3.2188 9 14 2.2814 2.0705 5.2614 10 1 3.1506 0.8920 5.5084 11 1 2.6781 3.1775 6.1684 12 1 0.8655 1.7039 5.5186 13 7 2.7149 3.3489 0.7182 14 6 2.7345 3.4065 -0.6186 15 6 3.0845 4.3980 -1.5483 16 7 2.9985 4.1553 -2.8375 17 6 2.5867 2.9916 -3.3160 18 6 2.2219 1.9585 -2.4780 19 6 2.2909 2.1523 -1.1042 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 3.1150 4.4353 3.9416 26 1 3.4255 5.3631 -1.2037 27 1 2.5353 2.8481 -4.3852 28 1 1.8884 1.0147 -2.8832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067172059.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = 66.925541 kcal Electronic energy + Delta-G solvation = -14157.848791 eV Core-core repulsion = 11788.031837 eV Total energy + Delta-G solvation = -2369.816954 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65762 -37.19985 -34.09214 -33.48109 -30.71262 -29.28214 -28.45494 -26.33303 -23.24745 -21.89443 -21.27996 -19.69229 -17.14632 -16.54258 -16.14716 -14.78240 -14.61012 -14.31040 -13.93855 -13.43358 -12.97274 -12.87003 -12.50779 -11.84104 -11.68047 -11.57948 -11.21091 -11.12021 -10.80214 -10.67658 -10.43511 -9.60679 -9.19099 -8.64824 -8.04138 -7.74189 -7.06190 -6.78311 -4.76120 2.02235 2.66688 2.94844 2.96283 2.98728 3.68415 3.93315 4.05085 4.91105 5.24671 5.38886 5.48153 5.54256 5.60801 5.70329 5.88528 6.01751 6.09919 6.17358 6.36574 6.47482 6.68085 6.82128 6.86552 7.26054 7.56602 7.67412 7.78646 8.08508 8.49753 8.85327 9.14926 9.79178 10.10434 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034792 B = 0.010486 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.596667 B = 2669.481506 C = 3388.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.534 5.534 4 C 0.417 3.583 5 C -0.434 4.434 6 H 0.089 0.911 7 C 0.075 3.925 8 N -0.712 5.712 9 Si 0.921 3.079 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.263 1.263 13 N -0.526 5.526 14 C 0.065 3.935 15 C 0.084 3.916 16 N -0.487 5.487 17 C 0.014 3.986 18 C -0.154 4.154 19 C 0.025 3.975 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.282 0.718 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -6.273 -1.089 6.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.230 5.230 4 C 0.182 3.818 5 C -0.472 4.472 6 H 0.107 0.893 7 C -0.153 4.153 8 N -0.333 5.333 9 Si 0.744 3.256 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.188 1.188 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.082 4.082 16 N -0.198 5.198 17 C -0.140 4.140 18 C -0.178 4.178 19 C -0.090 4.090 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.161 0.839 27 H 0.153 0.847 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.251 -4.926 -1.055 5.518 hybrid contribution -0.634 -1.735 0.797 2.012 sum -2.886 -6.661 -0.259 7.264 Atomic orbital electron populations 1.22149 0.95954 1.01491 1.02900 1.21277 0.94315 0.81727 1.02474 1.45533 1.60150 1.12094 1.05243 1.20563 0.89733 0.84041 0.87480 1.18515 1.41363 1.00628 0.86647 0.89320 1.25895 0.93591 0.94301 1.01506 1.69947 1.24201 1.04453 1.34733 0.86168 0.79873 0.79379 0.80193 1.18771 1.19860 1.18776 1.71354 1.30343 1.17743 1.05546 1.20635 0.99376 0.92904 0.93678 1.21665 1.02331 0.97821 0.86354 1.67255 1.14856 1.22368 1.15298 1.21666 1.04519 0.89504 0.98270 1.20543 1.06943 1.00254 0.90086 1.18964 1.06135 0.94703 0.89224 0.91942 0.91626 0.92771 0.91386 0.89804 0.90648 0.83901 0.84694 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 15 2 C 0.13 2.21 6.64 -4.04 -0.03 2.18 15 3 N -0.53 -12.32 2.84 -113.44 -0.32 -12.64 15 4 C 0.42 11.01 7.41 -155.53 -1.15 9.85 15 5 C -0.43 -10.76 8.99 -38.05 -0.34 -11.11 15 6 H 0.09 1.97 7.10 -52.48 -0.37 1.59 15 7 C 0.08 1.80 5.50 -17.29 -0.10 1.71 15 8 N -0.71 -18.42 11.85 55.57 0.66 -17.76 15 9 Si 0.92 17.33 29.56 -169.99 -5.03 12.30 15 10 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 11 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 12 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 13 N -0.53 -14.89 9.33 -10.27 -0.10 -14.99 15 14 C 0.06 1.70 7.25 -84.92 -0.62 1.08 15 15 C 0.08 2.02 11.30 -16.91 -0.19 1.83 15 16 N -0.49 -10.96 10.32 -12.75 -0.13 -11.09 15 17 C 0.01 0.29 11.16 -17.43 -0.19 0.10 15 18 C -0.15 -3.18 10.12 -39.44 -0.40 -3.58 15 19 C 0.03 0.60 6.92 -83.83 -0.58 0.02 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.08 1.39 7.32 -51.93 -0.38 1.01 15 25 H 0.28 6.58 8.29 -40.82 -0.34 6.24 15 26 H 0.14 3.18 8.06 -52.49 -0.42 2.76 15 27 H 0.14 2.25 8.06 -52.49 -0.42 1.83 15 28 H 0.11 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -29.92 250.22 -7.21 -37.13 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -2.85 Total: 3.39 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.22 Total: -0.11 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.11 Total: -56.48 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.92 -7.21 -37.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067172059.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.056 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds