Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34466 * 125.41516 * 2 1 4 4 C 1.46656 * 106.56256 * 179.82308 * 3 2 1 5 5 C 1.47185 * 126.99288 * 180.25108 * 4 3 2 6 6 N 1.32242 * 125.41913 * 0.16273 * 5 4 3 7 7 C 1.32484 * 110.03130 * 179.97438 * 6 5 4 8 8 C 1.39903 * 107.92581 * 359.97438 * 7 6 5 9 9 C 1.39792 * 126.94310 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00096 * 179.97438 * 9 8 7 11 11 C 1.39992 * 119.99994 * 359.97438 * 9 8 7 12 12 N 1.30917 * 119.99674 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99977 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47322 * 59.99780 * 13 11 9 15 15 H 1.48503 * 109.47085 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47022 * 299.99796 * 13 11 9 17 17 N 1.36783 * 125.41794 * 179.84849 * 5 4 3 18 18 H 0.97004 * 126.62130 * 359.97438 * 17 5 4 19 19 C 1.37966 * 106.01460 * 0.34253 * 4 3 2 20 20 N 1.35570 * 108.05109 * 359.65309 * 19 4 3 21 21 H 0.96998 * 124.89474 * 180.20247 * 20 19 4 22 22 H 1.09001 * 109.47059 * 269.98359 * 1 2 3 23 23 H 1.08998 * 109.47640 * 29.98790 * 1 2 3 24 24 H 1.09003 * 109.46894 * 149.98397 * 1 2 3 25 25 H 1.07999 * 126.71601 * 0.02562 * 3 2 1 26 26 H 1.07997 * 126.03532 * 179.97438 * 7 6 5 27 27 H 0.97005 * 119.99789 * 180.02562 * 12 11 9 28 28 H 1.08002 * 125.97776 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2862 1.0959 0.0000 4 6 3.6741 0.6220 0.0043 5 6 4.8921 1.4483 0.0111 6 7 4.9212 2.7704 0.0174 7 6 6.1756 3.1966 0.0229 8 6 7.0116 2.0748 0.0205 9 6 8.4095 2.0687 0.0241 10 1 8.9454 1.1311 0.0221 11 6 9.1147 3.2780 0.0302 12 7 8.4650 4.4146 0.0321 13 14 10.9827 3.2698 0.0357 14 1 11.4783 2.5717 -1.1776 15 1 11.4838 4.6678 0.0412 16 1 11.4710 2.5636 1.2473 17 7 6.1739 0.9709 0.0179 18 1 6.4444 0.0394 0.0196 19 6 3.6058 -0.7560 -0.0013 20 7 2.2976 -1.1118 -0.0007 21 1 1.9710 -2.0251 -0.0012 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3634 0.8900 -0.5136 24 1 -0.3633 -0.8899 -0.5141 25 1 1.9549 2.1238 0.0004 26 1 6.4962 4.2279 0.0282 27 1 8.9537 5.2526 0.0359 28 1 4.4473 -1.4329 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074280512.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = 56.009022 kcal Electronic energy + Delta-G solvation = -13474.044586 eV Core-core repulsion = 11103.754256 eV Total energy + Delta-G solvation = -2370.290330 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.86956 -41.14715 -35.60311 -32.90243 -32.54942 -32.04279 -29.92787 -27.12690 -26.12082 -22.78676 -21.79492 -20.83158 -20.54630 -19.03819 -17.86348 -17.46717 -16.14567 -15.52853 -14.86688 -14.75363 -14.59763 -14.42403 -13.94260 -13.51348 -13.25929 -13.20332 -12.89124 -12.78658 -12.68315 -12.38614 -11.93679 -11.30968 -10.41347 -10.22348 -9.90313 -9.08443 -8.52782 -8.40565 -6.18769 1.01643 1.42695 1.43335 1.57430 1.65492 2.21046 2.22198 2.51369 2.91670 3.11657 3.40473 4.11594 4.19817 4.40704 4.55192 4.88146 4.90038 5.02589 5.10642 5.14838 5.24180 5.39213 5.71135 5.72448 5.94338 6.06646 6.23096 6.51861 6.84619 6.91059 6.97532 7.42160 8.00603 8.44407 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.085770 B = 0.005948 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.376155 B = 4706.095369 C = 5017.323825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 C -0.210 4.210 4 C -0.106 4.106 5 C 0.153 3.847 6 N -0.505 5.505 7 C -0.172 4.172 8 C 0.160 3.840 9 C -0.472 4.472 10 H 0.085 0.915 11 C 0.023 3.977 12 N -0.833 5.833 13 Si 1.010 2.990 14 H -0.258 1.258 15 H -0.269 1.269 16 H -0.258 1.258 17 N -0.603 5.603 18 H 0.412 0.588 19 C -0.010 4.010 20 N -0.538 5.538 21 H 0.432 0.568 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.166 0.834 27 H 0.287 0.713 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -11.576 -0.051 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.236 4.236 4 C -0.115 4.115 5 C -0.099 4.099 6 N -0.225 5.225 7 C -0.321 4.321 8 C 0.046 3.954 9 C -0.507 4.507 10 H 0.103 0.897 11 C -0.190 4.190 12 N -0.460 5.460 13 Si 0.830 3.170 14 H -0.183 1.183 15 H -0.194 1.194 16 H -0.183 1.183 17 N -0.216 5.216 18 H 0.249 0.751 19 C -0.144 4.144 20 N -0.137 5.137 21 H 0.271 0.729 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.139 0.861 26 H 0.183 0.817 27 H 0.098 0.902 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.504 -10.870 -0.048 13.801 hybrid contribution 1.668 -0.638 0.011 1.786 sum -6.836 -11.507 -0.037 13.385 Atomic orbital electron populations 1.20401 0.84971 1.04402 1.03678 1.20560 0.94898 0.85303 1.07846 1.21630 0.90904 0.98118 1.12925 1.18529 0.89658 0.91717 1.11620 1.20349 0.83706 0.89194 1.16645 1.69545 1.24991 1.09436 1.18514 1.23279 0.86725 0.99541 1.22579 1.19345 0.91993 0.85528 0.98492 1.18722 0.88632 0.95103 1.48264 0.89655 1.26840 1.06770 0.93616 0.91801 1.69756 1.39772 0.99511 1.36975 0.84836 0.73782 0.78477 0.79936 1.18269 1.19385 1.18261 1.43055 1.05986 1.07963 1.64607 0.75076 1.22062 0.87524 0.93866 1.10977 1.41353 1.04504 1.08826 1.58975 0.72852 0.89918 0.90044 0.89341 0.86125 0.81702 0.90202 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.40 71.24 0.74 -0.56 15 2 C 0.03 0.71 7.11 40.98 0.29 1.00 15 3 C -0.21 -8.05 10.98 23.61 0.26 -7.79 15 4 C -0.11 -4.52 6.33 -18.79 -0.12 -4.64 15 5 C 0.15 8.09 7.96 135.99 1.08 9.17 15 6 N -0.50 -30.45 11.19 -186.32 -2.09 -32.53 15 7 C -0.17 -10.80 10.85 85.00 0.92 -9.88 15 8 C 0.16 9.33 6.95 38.86 0.27 9.60 15 9 C -0.47 -25.86 9.44 23.07 0.22 -25.65 15 10 H 0.09 4.25 7.85 -2.91 -0.02 4.22 15 11 C 0.02 1.21 5.50 85.25 0.47 1.68 15 12 N -0.83 -45.85 10.32 21.84 0.23 -45.63 15 13 Si 1.01 38.59 29.56 68.60 2.03 40.62 15 14 H -0.26 -9.44 7.11 99.48 0.71 -8.74 15 15 H -0.27 -9.84 7.11 99.48 0.71 -9.13 15 16 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 17 N -0.60 -30.34 6.30 -180.01 -1.13 -31.48 15 18 H 0.41 16.95 8.96 -92.71 -0.83 16.12 15 19 C -0.01 -0.32 11.98 84.05 1.01 0.68 15 20 N -0.54 -12.62 5.94 -181.24 -1.08 -13.70 15 21 H 0.43 6.00 8.96 -92.71 -0.83 5.17 15 22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 25 H 0.12 4.91 8.06 -2.91 -0.02 4.89 15 26 H 0.17 10.78 5.74 -2.91 -0.02 10.76 15 27 H 0.29 14.25 8.30 -92.70 -0.77 13.49 15 28 H 0.19 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -75.64 252.50 2.64 -73.00 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -0.46 Total: 36.10 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 5.14 Total: -26.38 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -4.07 Total: -123.34 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -75.64 2.64 -73.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074280512.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.005 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds